Bioconductor P.vals

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DEP P.vals adjustment

updated 4.7 years ago by James W. MacDonald 64k • written 4.7 years ago by 826599 ▴ 10

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Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by ATpoint ★ 3.6k

What is on the y-axis, show code?

Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by samer • 0

However, when examining the count plots, I've observed a frequent occurrence of significant adjusted p-values between conditions particular…

Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by samer • 0

I've conducted my DESeq2 analysis using the following code setup: dds <- DESeqDataSetFromMatrix(countData = data, colData = metadata, …

Comment: Can the limma package be applied to Log2 RUV-normalized data? by Shaimaa Gamal • 0

I see. Do you recommend a certain method to get norm.factors through calcNormFactors function espcially if the downstream analysis includes…

Comment: Can the limma package be applied to Log2 RUV-normalized data? by Gordon Smyth 49k

515 samples is certainly large enough.

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