Question

Cannot down load the "org.Hs.eg.db" completely

0

Entering edit mode

1650706262 • 0

@1650706262-21013

Last seen 5.6 years ago

I copied the Installation package to R (version "3.6") from the "Bioconductor" webside. However the R came up with warnings:

Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 331776 != reported length 2030028
2: In unzip(zipname, exdir = dest) 
3: In read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) :
  无法打开压缩文件'S4Vectors/DESCRIPTION'
> library("org.Hs.eg.db")
Error in library("org.Hs.eg.db")

software error probe • 1.4k views

ADD COMMENT • link updated 5.6 years ago by Martin Morgan 25k • written 5.6 years ago by 1650706262 • 0

0

Entering edit mode

package ‘IRanges’ successfully unpacked and MD5 sums checked
Error in read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type"))

ADD REPLY • link updated 5.6 years ago by Martin Morgan 25k • written 5.6 years ago by 1650706262 • 0

Martin Morgan · Answer 1 · 2019-06-13

0

Entering edit mode

Martin Morgan 25k

@martin-morgan-1513

Last seen 5 months ago

United States

Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 331776 != reported length 2030028

indicates that the download failed. Likely causes are an unreliable internet connection, disk full, or bad repository (hint for latter: don't set the option BioC_mirror).

ADD COMMENT • link 5.6 years ago Martin Morgan 25k

0

Entering edit mode

thangks a lot. well, i tried to download the "org.Hs.eg.db" derectly from the website to intalled it, but there still has some problems:

> install.packages("C:/Users/李文轩/AppData/Local/Temp/RtmpqGa8bx/downloaded_packages/org.Hs.eg.db_3.8.2.tar.gz",repos=NULL, type="source")
Warning message:
In install.packages("C:/Users/李文轩/AppData/Local/Temp/RtmpqGa8bx/downloaded_packages/org.Hs.eg.db_3.8.2.tar.gz",  :
  安装程序包‘C:/Users/李文轩/AppData/Local/Temp/RtmpqGa8bx/downloaded_packages/org.Hs.eg.db_3.8.2.tar.gz’时退出狀態的值不是0

ADD REPLY • link updated 5.6 years ago by Martin Morgan 25k • written 5.6 years ago by 1650706262 • 0

0

Entering edit mode

Please check disk space, both on the disk that the download file is located, and in the install location(s) indicated by .libPaths(). Is the library location (from .libPaths()) on a network share different from the temporary directory?

ADD REPLY • link 5.6 years ago Martin Morgan 25k