Showing : probe • reset
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789
views
filtering on variance
probe affy probe affy
updated 3 months ago by 43k • written 13.6 years ago by ▴ 90
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131
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Probe Design questions
probe affy
10 months ago henry1995910343 • 0
4
votes
10
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379
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how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 14 months ago by 3.2k • written 14 months ago by ▴ 10
0
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8
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209
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Combining 2 datasets from 2 different RNAseq experiments
deseq2 normalization probe
updated 16 months ago by 33k • written 16 months ago by • 0
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87
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Program to calculate genetic distances with long sequences
probe go
17 months ago antoniorevail • 0
0
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5
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348
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Does anyone have experience using the massiR package?
massiR microarray R probe
22 months ago Steve Lowe ▴ 10
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0
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143
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massiR Extracting and Plotting Y Chr Probe Data
probe microarray
23 months ago Steve Lowe ▴ 10
0
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1
reply
259
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Determining survival correlation among probes
annotation probe microarray
24 months ago sbrackett007 • 0
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4
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257
views
Cannot down load the "org.Hs.eg.db" completely
software error probe
updated 2.1 years ago by 25k • written 2.1 years ago by • 0
2
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4
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419
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SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
2.3 years ago s.goncalvesclaro ▴ 10
0
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2
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535
views
liftover probe annotation from hg19 to hg38 for methylation array data using minfi (EPIC methylation array data)
annotation probe software error EPIC methylation array
2.3 years ago brendan.miller • 0
1
vote
3
replies
250
views
I can't install the package "matchprobes"
software error probe
updated 2.4 years ago by 57k • written 2.4 years ago by • 0
0
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0
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251
views
How to merging multiple GSEs with different GPLs?
microarray probe R
2.5 years ago maryam.sabet • 0
0
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1
reply
420
views
MCLUST: finding the best number of Gaussian components to fit my data
software error microarray probe annotation
updated 2.5 years ago by 33k • written 2.5 years ago by • 0
0
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0
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743
views
ath1121501probe_1.0 error (was GCRMA missing value error on ATH1 chip)
probe affy probe affy
updated 2.5 years ago by 0 • written 17.5 years ago by ▴ 940
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3
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2.3k
views
Use probesets with highest baseline expression for differential gene
Annotation probe limma
9.4 years ago • updated 2.9 years ago Gordon Smyth 43k
1
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2
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362
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 2.9 years ago by 57k • written 2.9 years ago by • 0
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2
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1.3k
views
[ComBat] ComBat outputting NAs with Large Batches - Switch to Log Likelihood
probe probe
updated 3.3 years ago by • 0 • written 8.7 years ago by ▴ 10
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0
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587
views
Probe annotations for ABI Human Genome Survey V2 microarray using Oracle
annotation probe microarray abi human genome survey v2 Oracle
3.4 years ago judemtaylor • 0
1
vote
3
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1.3k
views
GO terms: Annotation for HumanMethylation450
Annotation GO probe Annotation GO probe
updated 3.4 years ago by • 0 • written 8.3 years ago by ▴ 970
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1
reply
447
views
index of probes in Illumina Infinium MethylationEPIC BeadChip
probe
3.5 years ago mcarmel • 0
4
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5
replies
1.2k
views
Retrieving probes mapping to gene ID in microarray analysis
microarray affymetrix probeset probe
updated 3.8 years ago by ★ 5.0k • written 3.8 years ago by • 0
0
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1
reply
622
views
Multiple samples on the same graph
Pathview probe
updated 4.0 years ago by ★ 1.5k • written 4.0 years ago by • 0
0
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1
reply
477
views
probe set-gene relation
probe geneid probeset
updated 4.3 years ago by 57k • written 4.3 years ago by • 0
0
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8
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959
views
raw probe set expression data and masking questions
Normalization Cancer probe affy PROcess Normalization Cancer probe affy PROcess
updated 4.3 years ago by ▴ 40 • written 14.9 years ago by ▴ 20
1
vote
6
replies
764
views
Remove a list of specific probes from an HTAFeatureSet
pd.clariom.d.human affy probe
updated 4.4 years ago by 57k • written 4.4 years ago by ▴ 40
1
vote
5
replies
625
views
Filter out ranges by number of probes
probe ranges
updated 4.4 years ago by ★ 5.0k • written 4.4 years ago by ▴ 30
0
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0
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578
views
removing probes representing in a certain beads
minfi probe preprocessing
4.5 years ago niutster • 0
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4
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1.1k
views
minfi probe removal
minfi probe
updated 4.5 years ago by 57k • written 4.5 years ago by • 0
3
votes
4
replies
3.8k
views
LIMMA and Agilent single color
Annotation probe limma agilent
10.6 years ago • updated 4.5 years ago Gordon Smyth 43k
0
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1
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1.3k
views
LIMMA and Agilent single color
probe limma probe limma
updated 4.5 years ago by 43k • written 10.6 years ago by ▴ 60
1
vote
4
replies
1.1k
views
How to install old GenomicRanges 1.14.4 package ?
bioconductor R cancer probe deseq2
updated 5.2 years ago by ▴ 10 • written 5.2 years ago by • 0
0
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1
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979
views
'could not find function "R (>= 2.1"' while trying https://bioconductor.org/packages/3.2/bioc, trying https://bioconductor.org/packages/3.1/bioc …
cancer probe microarray
updated 5.3 years ago by 25k • written 5.3 years ago by • 0
0
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1
reply
707
views
Importing and Extracting Annotation
annotation zebrafish probe
updated 5.3 years ago by 57k • written 5.3 years ago by • 0
2
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3
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1.1k
views
i need AGI code as my probset
affy cdf probe
5.7 years ago • updated 5.5 years ago Angel ▴ 40
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5
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1.1k
views
"oligo" package: probenames/probeinfo different from expr-set (read.cellfles): miRNA 4.0 (affy)
microarray probe annotation affy
5.5 years ago dietmar.pils • 0
0
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0
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694
views
Help for affy
affy process probe
5.5 years ago weizhong_2007 • 0
0
votes
3
replies
8.3k
views
How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 6.0 years ago by ▴ 780 • written 6.0 years ago by ▴ 10
1
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4
replies
796
views
mutually add a tab in the beggining of the header to make it a valid RMA format
software error probe affy RMA
6.0 years ago Angel ▴ 40
2
votes
2
replies
1.7k
views
Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
6.1 years ago maden.sean ▴ 10
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5
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4.5k
views
How to do Affy ST array analysis
Annotation Normalization hgu133a probe affy oligo Annotation Normalization hgu133a probe
updated 6.1 years ago by • 0 • written 7.2 years ago by ★ 12k
0
votes
1
reply
858
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 6.2 years ago by • 0 • written 14.6 years ago by ▴ 170
0
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2
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743
views
difficulty in mapping gene names to probes coordinates in a celfile
microarray probe
updated 6.4 years ago by 57k • written 6.4 years ago by • 0
0
votes
2
replies
1.0k
views
Affymetrix file with probe set id
probe affy PROcess probe affy PROcess
updated 6.4 years ago by • 0 • written 16.8 years ago by ▴ 590
0
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3
replies
1.7k
views
filtering out probes with no gene symbol from expressionSet
probe filter subset gene symbol affy
6.4 years ago alakatos ▴ 110
1
vote
1
reply
1.2k
views
Coercion of MethyLumiSet to MethyLumiR changes raw methylation values?
Normalization probe lumi Normalization probe lumi
updated 6.5 years ago by • 0 • written 7.4 years ago by ▴ 20
1
vote
2
replies
1.2k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma affy probe qualitycontrol design and contrast matrix
updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 110
6
votes
2
replies
1.2k
views
Should I skip the eBayes step when using Limma for Affymetrix miRNA v1 chip?
miRNA cdf probe limma miRNA cdf probe limma
updated 6.8 years ago by 43k • written 6.9 years ago by ★ 12k
0
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4
replies
794
views
hugene10sttranscriptclusterACCNUM has no mappings
Annotation GO ChipDb probe
updated 6.9 years ago by ▴ 20 • written 6.9 years ago by ★ 7.2k
0
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0
replies
556
views
packages similar to Jetset but for mouse platforms
probe probe
6.9 years ago Laurent.Pays ▴ 20
50 results • Page 1 of 1
Recent ...
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Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Michael Love 33k
Q1: No I meant just use your results from above that you called "the first way". Not sub-setting, as you will have worse dispersion estimat…
Comment: Best practice for quantifying sncRNA by Abhishek • 0
I wonder what would be a good metric to assess the quantification quality
Comment: Best practice for quantifying sncRNA by Abhishek • 0
Thank you for sharing your thoughts. I used Salmon and indexed using hg38 gencodes transcriptome. After the tximport step, I ended up gett…
Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Ming ▴ 350
Thx so much for the diagnosis and advice. Indeed, in my data, some genes have all 0 for all sampes of a contrast for both "Mut" and "WT" gr…
Comment: Best practice for quantifying sncRNA by Steve Lianoglou 13k
> It's my opinion that miRNA is a mirage intended to make MDs salivate and biostatisticians wail in misery, but what do I know? I'll tell …
Votes
Comment: Idea: Using DESeq2 to test a change in ratio of two genes
Time Series Analysis
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels
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