Error on zlib.h while installing esATAC on Ubutu
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vedbar • 0
@vedbar-21249
Last seen 22 months ago

I got error while installing esATAC on Ubuntu 16.04 LTS. devtools::install_github("wzthu/esATAC")

fastq_io.h:30:10: fatal error: zlib.h: No such file or directory
 #include <zlib.h>
          ^~~~~~~~
compilation terminated.
make[1]: *** [Makefile:46: demultiplex.o] Error 1
make[1]: Leaving directory '/tmp/RtmpOcp5qQ/R.INSTALLd5ad4c460074/Rbowtie2/src/adapterremoval'
make: *** [Makefile:10: all] Error 2
ERROR: compilation failed for package ‘Rbowtie2’
* removing ‘/home/vedbar/miniconda2/lib/R/library/Rbowtie2’
Error: Failed to install 'esATAC' from GitHub:
  (converted from warning) installation of package ‘Rbowtie2’ had non-zero exit status.

I ran but was already installed

$sudo apt-get install zlib1g-dev

Thank you in advance for your kind help!

software error esATAC zlib.h Ubuntu Tutorial • 522 views
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are you using a conda / bioconda environment?

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Yes, I am using a conda environment.

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@martin-morgan-1513
Last seen 1 day ago
United States

The problem is with the way conda specifies compiler search paths. I suggest you reach out to conda support channels to resolve this.

Depending on your reason for using conda, a different solution might be the bioconductor_full docker image.

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