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HAILYTR
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0
@hailytr-21695
Last seen 5.4 years ago
Hi, I have used Deseq2 packages for months but today when I tried to install the package, using BiocManager::install("DESeqDataSet")
I received:
Bioconductor version 3.9 (BiocManager 1.30.4), R 3.6.1
(2019-07-05)
Installing package(s) 'DESeqDataSet'
Update old packages: 'sys'
Update all/some/none? [a/s/n]:
a
There is a binary version available but the source
version is later:
binary source needs_compilation
sys 3.2 3.3 TRUE
Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.6/sys_3.2.zip'
Content type 'application/zip' length 59724 bytes (58 KB)
downloaded 58 KB
package ‘sys’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\tranl\AppData\Local\Temp\RtmpItqrwM\downloaded_packages
****Warning message:
package ‘DESeqDataSet’ is not available (for R version 3.6.1)**
Why doesn't R think that the package is available?
sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 17763)
Matrix products: default
Random number generation:
RNG: Mersenne-Twister
Normal: Inversion
Sample: Rounding
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
loaded via a namespace (and not attached):
[1] BiocManager_1.30.4 compiler_3.6.1 Matrix_1.2-17
[4] tools_3.6.1 parallel_3.6.1 curl_4.0
[7] remotes_2.1.0 grid_3.6.1 data.table_1.12.2
[10] BiocParallel_1.18.1 lattice_0.20-38
Thanks for your help.