I am following this vignette to use transcriptR to combine RNASeq and ChIPSeq data.
Unfortunately I'm falling at the first hurdle - as when I am trying to insert the path to bam file for my RNASeq files follwing the Vignette - the script is not expecting a file path, but instead, "known genes". When I try to put the file path in anyway, I get an
Error: unexpected '/' in "tds <- constructTDS(~/"
I loaded the libraries and installed transcriptR successfully before this following the script in the same vignette.
Any help would be appreciated.