Question

extracting the genes associated with a specific pathway

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Bogdan ▴ 670

@bogdan-2367

Last seen 13 months ago

Palo Alto, CA, USA

Dear all,

please would you advise :

which resource shall i use (possibly AnnotationHub, or KEGG / BIOGRID related packages ?) in order to extract the names of the genes associated with a pathway (for example: the list of genes associated with TP53 pathway ?). thanks a lot !

-- bogdan

pathway KEGG annotation annotationhub • 1.3k views

ADD COMMENT • link updated 4.5 years ago by James W. MacDonald 67k • written 4.5 years ago by Bogdan ▴ 670

score 0 · Answer 1 · 2020-06-02

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James W. MacDonald 67k

@james-w-macdonald-5106

Last seen 2 hours ago

United States

Have you looked at the KEGGREST package?

ADD COMMENT • link 4.5 years ago James W. MacDonald 67k

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thank you, James ! wishing you a fruitful summer time !

ADD REPLY • link 4.5 years ago Bogdan ▴ 670

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thank you, James ! wishing you a fruitful summer time !

ADD REPLY • link 4.5 years ago Bogdan ▴ 670