Entering edit mode
thomaskim1995
•
0
@thomaskim1995-24014
Last seen 4.6 years ago
Hello, I am trying to install DESeq2 in R but I am running into problems where multiple packages have non-zero exit status and thus are not installing properly.
i.e.)
dyld: lazy symbol binding failed: Symbol not found: _utimensat
Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib (which was built for Mac OS X 10.13)
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat
Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib (which was built for Mac OS X 10.13)
Expected in: /usr/lib/libSystem.B.dylib
/Library/Frameworks/R.framework/Resources/bin/INSTALL: line 34: 3163 Done echo 'tools:::.install_packages()'
3164 Abort trap: 6 | R_DEFAULT_PACKAGES= LC_COLLATE=C "${R_HOME}/bin/R" $myArgs --no-echo --args ${args}
The downloaded source packages are in
‘/private/var/folders/3p/sq3f3xwn2514bdl766r2jmj80000gn/T/RtmpcyqTMP/downloaded_packages’
Warning messages:
1: In install.packages(update[instlib == l, "Package"], l, repos = repos, :
installation of package ‘dplyr’ had non-zero exit status
2: In install.packages(update[instlib == l, "Package"], l, repos = repos, :
installation of package ‘pbapply’ had non-zero exit status
3: In install.packages(update[instlib == l, "Package"], l, repos = repos, :
installation of package ‘MASS’ had non-zero exit status
Can anyone help me install the DESeq2 package? I've tried installing the other packages independently, but I am still running into the same problem.
To help, can you show the exact command that you have used to try to install DESeq2? Please also show the output of
sessionInfo()
Can you also show the full command and output you used to try an install?