Entering edit mode
chao-1993
•
0
@chao-1993-24167
Last seen 4.2 years ago
I am getting following error in WIN10 R
> if (!requireNamespace("BiocManager", quietly = TRUE))
+ install.packages("BiocManager")
>
> BiocManager::install("org.Hs.eg.db")
Bioconductor version 3.11 (BiocManager 1.30.10), R 4.0.2 (2020-06-22)
Installing package(s) 'org.Hs.eg.db'
installing the source package ‘org.Hs.eg.db’
试开URL’https://bioconductor.org/packages/3.11/data/annotation/src/contrib/org.Hs.eg.db_3.11.4.tar.gz'
Content type 'application/x-gzip' length 79959831 bytes (76.3 MB)
downloaded 76.3 MB
* installing *source* package 'org.Hs.eg.db' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'org.Hs.eg.db'
finding HTML links ... 好了
org.Hs.egACCNUM html
org.Hs.egALIAS2EG html
org.Hs.egBASE html
org.Hs.egCHR html
org.Hs.egCHRLENGTHS html
org.Hs.egCHRLOC html
org.Hs.egENSEMBL html
org.Hs.egENSEMBLPROT html
org.Hs.egENSEMBLTRANS html
org.Hs.egENZYME html
org.Hs.egGENENAME html
org.Hs.egGO html
org.Hs.egMAP html
org.Hs.egMAPCOUNTS html
org.Hs.egOMIM html
org.Hs.egORGANISM html
org.Hs.egPATH html
org.Hs.egPFAM html
org.Hs.egPMID html
org.Hs.egPROSITE html
org.Hs.egREFSEQ html
org.Hs.egSYMBOL html
org.Hs.egUCSCKG html
org.Hs.egUNIGENE html
org.Hs.egUNIPROT html
org.Hs.eg_dbconn html
** building package indices
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for 'org.Hs.eg.db':
.onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
call: NULL
error: Failed to load extension: 找不到指定的模块。
错误: 载入失败
停止执行
ERROR: loading failed
* removing 'C:/Users/孙超/Documents/R/win-library/4.0/org.Hs.eg.db'
The downloaded source packages are in
‘C:\Users\孙超\AppData\Local\Temp\RtmpQHn0Wd\downloaded_packages’
Installation path not writeable, unable to update packages: MASS, mgcv, nlme, survival
Warning message:
In install.packages(...) :
installation of package ‘org.Hs.eg.db’ had non-zero exit status
You don't seem to have the rights to write on that folder. Probably you should contact the administrator or the IT department
I think the user name with non-ASCII characters, and temporary directory, is causing problems. The temporary directory can be solved with an environment variable TMPDIR pointing to some other location.