Hello, Could someone suggest a R package for handling Nimblegen expression arrays? Thanks, Xinxia

Great. Is it the devel package? It seems that it needs R 2.5.0? Xinxia -----Original Message----- From: Benilton Carvalho [mailto:bcarvalh@jhsph.edu] Sent: Monday, January 29, 2007 9:49 AM To: Xinxia Peng Cc: bioconductor at stat.math.ethz.ch Subject: Re: [BioC] Looking for R package for Nimblegen expression data The oligo package handles those, and you'll need to use the makePlatformDesign package to build the data pkg required for analysis. The following might be helpful: http://www.bioconductor.org/workshops/2006/BioC2006/labs/bcarvalho/ tutorial-slides.pdf and contact me if you need any help regarding this, given that the documentation is not ready. b On Jan 29, 2007, at 12:18 PM, Xinxia Peng wrote: > Hello, > > Could someone suggest a R package for handling Nimblegen expression > arrays? > > Thanks, > Xinxia

OK. I will let you know what I get. Thanks, Xinxia -----Original Message----- From: Benilton Carvalho [mailto:bcarvalh@jhsph.edu] Sent: Monday, January 29, 2007 10:00 AM To: Xinxia Peng Cc: bioconductor at stat.math.ethz.ch Subject: Re: [BioC] Looking for R package for Nimblegen expression data Yes, my bad not mentioning that... it's in the devel branch and it does requires R-2.5.0. b On Jan 29, 2007, at 12:58 PM, Xinxia Peng wrote: > Great. Is it the devel package? It seems that it needs R 2.5.0? > > Xinxia > > -----Original Message----- > From: Benilton Carvalho [mailto:bcarvalh at jhsph.edu] > Sent: Monday, January 29, 2007 9:49 AM > To: Xinxia Peng > Cc: bioconductor at stat.math.ethz.ch > Subject: Re: [BioC] Looking for R package for Nimblegen expression > data > > The oligo package handles those, and you'll need to use the > makePlatformDesign package to build the data pkg required for > analysis. > > The following might be helpful: > > http://www.bioconductor.org/workshops/2006/BioC2006/labs/bcarvalho/ > tutorial-slides.pdf > > and contact me if you need any help regarding this, given that the > documentation is not ready. > > b > > On Jan 29, 2007, at 12:18 PM, Xinxia Peng wrote: > >> Hello, >> >> Could someone suggest a R package for handling Nimblegen expression >> arrays? >> >> Thanks, >> Xinxia

The oligo package handles those, and you'll need to use the makePlatformDesign package to build the data pkg required for analysis. The following might be helpful: http://www.bioconductor.org/workshops/2006/BioC2006/labs/bcarvalho/ tutorial-slides.pdf and contact me if you need any help regarding this, given that the documentation is not ready. b On Jan 29, 2007, at 12:18 PM, Xinxia Peng wrote: > Hello, > > Could someone suggest a R package for handling Nimblegen expression > arrays? > > Thanks, > Xinxia