Hi Sebastian, Sebastian Bauer <sebastian.bauer at="" charite.de=""> writes: > I'd like to install the "impute" package on my 64bit debian system. > So it seems that the installed gfortan isn't able to deal with the > source. I have no experiences with the Fortan language so I can't tell > if there is indeed something wrong with the sources or if it is merely > my installation. More specific, I'm using the 4.1 series of the GNU > compiler tools. Are there issues know with this particular compiler > suite associated with the impute package? Any solutions to work around > the problem? Any hints are highly appreciated. We are seeing the same issues on our build systems. This is almost certainly due to gfortran being more strict than g77. I have sent the impute package maintainer an email asking that he take a look. + seth -- Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center http://bioconductor.org

Sebastian Bauer <sebastian.bauer at="" charite.de=""> writes: > Hi Seth, > > Seth Falcon wrote: >> We are seeing the same issues on our build systems. This is almost >> certainly due to gfortran being more strict than g77. > > Yes, you're right. When compiling the file manually with g77 it runs > through. Is there any possibility to alter R to take g77 instead the > gfortran compiler? Well, yes. But I suspect you would want all of R to be using same fortran and that the way to do it is to rebuild R from source setting a config option. The R Admin manual might have some useful details. Before you recompile, I suppose it wouldn't hurt to edit R's Makeconf file located in R_HOME/etc/Makeconf. >> I have sent the impute package maintainer an email asking that he take >> a look. And I've heard back that he has a patch that should be applied this week. + seth -- Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center http://bioconductor.org

Hi Seth, Seth Falcon wrote: > We are seeing the same issues on our build systems. This is almost > certainly due to gfortran being more strict than g77. Yes, you're right. When compiling the file manually with g77 it runs through. Is there any possibility to alter R to take g77 instead the gfortran compiler? > I have sent the impute package maintainer an email asking that he take > a look. Thanks as well. Ciao, Sebastian