Benilton Carvalho wrote: > Hi Herve, > > thanks for your feedback. > > I do have libstdc++ and libstd++-devel (3.4.6-3) available... and > c++config.h is installed on my system. Can you compile those 2 lines with g++? #include <bits c++config.h=""> int main() {} (put them in file test.cpp and try to compile with 'g++ -Wall test.cpp') If you can't then this means that g++ can't find your c++config.h file. Make sure that: - /usr/include/c++/3.4.6/ is a standard system include directory: look at the value of the "--with-gxx-include-dir" configuration option in the ouput of 'g++ -v' - c++config.h is in /usr/include/c++/3.4.6/bits Cheers, H. > > Any chance it is something else? > > thanks, > b > > > On Mar 19, 2007, at 2:43 PM, Herve Pages wrote: > >> Hi Benilton, >> >> Make sure that you have the libstdc++ _and_ the libstdc++-devel RPMs >> installed on your Red Hat system. >> On my SuSE 10.2 system, the exact names for those RPMs are >> libstdc++41 >> libstdc++41-devel >> The c++config.h file is included in the libstdc++41-devel RPM. >> >> Cheers, >> H. >> >> Benilton Carvalho wrote: >>> Hi everyone, >>> >>> I just built from the source R-2.4.1, so it's a "brand new" >>> installation. >>> >>> Then: >>> >>> source("http://www.bioconductor.org/bioLite.R") >>> biocLite(c("simpleaffy", "affyPLM", "RColorBrewer")) >>> >>> everything goes almost OK: I can't get genefilter to install >>> (therefore I >>> don't have simpleaffy) >>> >>> It's a long output that I get, but it starts with: >>> >>> In file included from >>> /usr/lib/gcc/x86_64-redhat- linux/3.4.6/../../../../include/c++/3.4.6/vector:67, >>> >>> from half_range_mode.cpp:4: >>> /usr/lib/gcc/x86_64-redhat- linux/3.4.6/../../../../include/c++/3.4.6/bits/stl_algobase.h:64:28: >>> >>> bits/c++config.h: No such file or directory >>> In file included from >>> /usr/lib/gcc/x86_64-redhat- linux/3.4.6/../../../../include/c++/3.4.6/vector:68, >>> >>> from half_range_mode.cpp:4: >>> /usr/lib/gcc/x86_64-redhat- linux/3.4.6/../../../../include/c++/3.4.6/bits/allocator.h:80: >>> >>> error: expected template-name before '<' token >>> /usr/lib/gcc/x86_64-redhat- linux/3.4.6/../../../../include/c++/3.4.6/bits/allocator.h:80: >>> >>> error: expected `{' before '<' token >>> /usr/lib/gcc/x86_64-redhat- linux/3.4.6/../../../../include/c++/3.4.6/bits/allocator.h:80: >>> >>> error: expected unqualified-id before '<' token >>> >>> >>> Have anyone observed something like this? >>> >>> thanks, >>> >>> b. >>> >>> -- >>> >>>> sessionInfo() >>> R version 2.4.1 (2006-12-18) >>> x86_64-unknown-linux-gnu >>> >>> locale: >>> LC_CTYPE=en_US.iso885915;LC_NUMERIC=C;LC_TIME=en_US.iso885915;LC_C OLLATE=en_US.iso885915;LC_MONETARY=en_US.iso885915;LC_MESSAGES=en_US.i so885915;LC_PAPER=en_US.iso885915;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE= C;LC_MEASUREMENT=en_US.iso885915;LC_IDENTIFICATION=C >>> >>> >>> attached base packages: >>> [1] "stats" "graphics" "grDevices" "utils" "datasets" >>> "methods" >>> [7] "base" >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at stat.math.ethz.ch >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>>