On Jan 8, 2010, at 12:33 PM, Seth Falcon wrote: > Hi Ren?, > > This is not a Bioconductor related problem. Perhaps you should ask on r-sig-db or r-sig-mac? > > How have you installed MySQL on your system? Or perhaps more relevant: it seems to be looking for a 64bit version of MySQL since you seem to be using a 64bit version of R > Also, you are using an out of date version of R and Bioconductor packages. You might also consider upgrading. > > + seth > > On 1/7/10 10:06 AM, Ren? Dreos wrote: >> Dear Bioconductor mailing list, >> >> I am runing R 2.9 and I am having some problems loading RMySQL library: >> >>> library(RMySQL) >> Error in dyn.load(file, DLLpath = DLLpath, ...) : >> unable to load shared library >> '/Library/Frameworks/R.framework/Resources/library/RMySQL/libs/x86_ 64/RMySQL.so': >> >> dlopen(/Library/Frameworks/R.framework/Resources/library/RMySQL/lib s/x86_64/RMySQL.so, >> 6): Symbol not found: _mysql_affected_rows >> Referenced from: >> /Library/Frameworks/R.framework/Resources/library/RMySQL/libs/x86_6 4/RMySQL.so >> Expected in: dynamic lookup >> >> Error : .onLoad failed in 'loadNamespace' for 'RMySQL' >> Error: package/namespace load failed for 'RMySQL' >>> sessionInfo() >> R version 2.9.2 (2009-08-24) >> x86_64-apple-darwin9.8.0 >> >> locale: >> C >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> other attached packages: >> [1] DBI_0.2-4 RColorBrewer_1.0-2 >> [3] arrayQualityMetrics_2.2.3 affyPLM_1.20.0 >> [5] annotate_1.22.0 simpleaffy_2.20.0 >> [7] gcrma_2.16.0 genefilter_1.24.2 >> [9] bradiar1b520742cdf_1.22.0 preprocessCore_1.6.0 >> [11] affxparser_1.16.0 makecdfenv_1.22.0 >> [13] affyio_1.12.0 limma_2.18.3 >> [15] affy_1.22.1 matchprobes_1.16.0 >> [17] Biostrings_2.12.9 IRanges_1.2.3 >> [19] AnnotationDbi_1.6.1 Biobase_2.4.1 >> >> loaded via a namespace (and not attached): >> [1] RSQLite_0.7-2 beadarray_1.12.1 grid_2.9.2 >> hwriter_1.1 >> [5] lattice_0.17-25 latticeExtra_0.6-4 marray_1.22.0 >> splines_2.9.2 >> [9] stats4_2.9.2 survival_2.35-4 tools_2.9.2 >> vsn_3.12.0 >> [13] xtable_1.5-5 >> >> Has someone else got the same problem? How can I solve it? >> >> Thank you very much indeed, >> best >> r >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > > -- > Seth Falcon > Bioconductor Core Team | FHCRC > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor