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ANYOU WANG
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30
@anyou-wang-4388
Last seen 10.5 years ago
Hello, everyone
A question about readAligned. I tried to input the .map
aligned sequence data using readAligned, but it failed (detail
below), even using the testing data downloaded from the ShortRead
website.
Could anyone give some suggestions? Thanks.
Anyou
expdir<-"/disk2/lab/tmp1/"
Test.me3 <- sapply( list.files( expdir, "*.map" ),function(filename)
readAligned(expdir, filename, type="MAQMapShort" ))
Error: Input/Output
'readAligned' failed to parse files
dirPath: '/disk2/lab/tmp1/'
pattern: 'run4_lane8.map'
type: 'MAQMapShort'
error: function '_new_RoSeqs_from_CharAEAE' not provided by
package 'Biostrings'
***my system info below
Mandriva Linux 2010, 64bit, 8 CPU,12G RAM.
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