On 2/15/2013 4:19 PM, Hervé Pagès wrote: > Hi Rishi, > > Papaya not being a model organism, it's hard for us to justify putting > resources on supporting a BSgenome package for it. Have you tried to > make your own BSgenome package? Please have a look at the BSgenomeForge > vignette in the BSgenome *software* package for how to do this. Let us > know if you run into problems and need help with this. Also, a lighter-weight solution might use Rsamtools::FaFile to access the fasta sequences using, e.g., getSeq(). Martin > > Cheers, > H. > > > On 02/04/2013 09:34 AM, Rishi [guest] wrote: >> I foud the MeDIP seq analysis in your package very interesting to me but my >> genome (papaya) was not listed there. The genome is available on phytozome >> http://www.phytozome.net/cgi-bin/gbrowse/papaya/ >> >> ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Cpapaya/ >> >> Is there anyway you can add the papaya genome to the BSgenome package >> >> Rishi Aryal >> Department of Plant biology >> University of Illinois at Urbana-Champaign >> >> -- output of sessionInfo(): >> >> aaa >> >> -- >> Sent via the guest posting facility at bioconductor.org. >> > -- Dr. Martin Morgan, PhD Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109