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Question: (Closed) illumina methylation data
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gravatar for bonafedeirene
4.2 years ago by
bonafedeirene0 wrote:
Dear all I have a tabular file from DNA methylation with "Beta" values (rows are CpG island and columns are beta values) from Illumina platform. The Beta values range between 0 and 1. I'm looking for DMR and I'd like to analyze the genes that could be involved in cancer. I saw some packages such as limma and ChAMP but I'm new to R and I don't understand the input format. Could you help me? Thank you
ADD COMMENTlink written 4.2 years ago by bonafedeirene0

Hello bonafedeirene!

We believe that this post does not fit the main topic of this site.

(Because detailed instructions were given for a more specific query you posed about champ.)

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink modified 4.2 years ago • written 4.2 years ago by Vincent J. Carey, Jr.6.2k
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