Question: (Closed) illumina methylation data
I have a tabular file from DNA methylation with "Beta"
values (rows are CpG island and columns are beta values) from Illumina
platform. The Beta values range between 0 and 1.
I'm looking for DMR and I'd like to analyze the genes that could be involved in cancer. I saw some packages such as limma and ChAMP but I'm new to R and I don't understand the input format. Could you help me?