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Showing :
snp
•
reset
0
votes
0
replies
44
views
Extract flanking sequences SNP without reference genome
SNPData
snpStats
SNP
flankingsequences
14 days ago
Amber
• 0
1
vote
2
replies
353
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 8 months ago by
Hervé Pagès
14k • written 8 months ago by
Mahan
• 0
5
votes
11
replies
299
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r
biomart
SNP
annotation
HUGO
updated 8 months ago by
Mike Smith
★ 4.9k • written 8 months ago by
aroso491
• 0
2
votes
2
replies
145
views
How to convert 1000 genomes VCF files to the format of traditional SNP array format?
SNP
1000genome
updated 9 months ago by
Martin Morgan
25k • written 9 months ago by
syrttgump
▴ 20
1
vote
2
replies
285
views
TCGA MAF (Mutations) data
TCGA
MAF
GDC
snp
mutations
updated 23 months ago by
Sean Davis
21k • written 23 months ago by
mario.zanfardino
▴ 160
0
votes
0
replies
238
views
genetic and linkage maps construction
genetic map
linkage maps
SNP
assembly
GBS
2.2 years ago
mictadlo
• 0
0
votes
0
replies
230
views
R: estimating error rate of replicated samples
R
SNP
genotyping
genetic diversity
2.2 years ago
meriam.nef
• 0
0
votes
0
replies
489
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 2.5 years ago by
Martin Morgan
25k • written 2.5 years ago by
pltbiotech_tkarthi
• 0
0
votes
11
replies
1.9k
views
SNP6 data to VCF
SNP
oligo
ASSIGN
SNP
oligo
ASSIGN
updated 2.6 years ago by
giulio.genovese
• 0 • written 9.2 years ago by
Sean Davis
21k
0
votes
1
reply
373
views
Finding/Understanding Affy 6.0 Annotation File
affy
affymetrix
microarray
SNP
2.7 years ago
CantExitVIM
▴ 10
3
votes
5
replies
679
views
Understanding PureCN and its germline SNPs
PureCN
germline
SNP
updated 2.9 years ago by
kakbrus
• 0 • written 3.0 years ago by
twtoal
• 0
0
votes
1
reply
1.0k
views
VCF file non-SNP germline mutations
PureCN
VCF
SNP
updated 3.0 years ago by
markus.riester
▴ 110 • written 3.0 years ago by
twtoal
• 0
0
votes
3
replies
1.1k
views
dbSNP - getting details of Pubmed ID for a SNP
SNP
SNP
updated 3.1 years ago by
hsiaoyi0504
• 0 • written 11.3 years ago by
Paul Evans
▴ 180
0
votes
1
reply
524
views
How to draw venn diagram with four CSV files
R
SNP
venn diagram
updated 3.2 years ago by
James W. MacDonald
56k • written 3.2 years ago by
kwangseob
• 0
0
votes
0
replies
350
views
Wtccc sanger dataset
SNP
3.2 years ago
hadeel.alzoubi
• 0
0
votes
1
reply
424
views
How to map a SNP to all genes within 50kb (upstream or downstream) of the SNP?
annotation
R
snp
updated 3.7 years ago by
James W. MacDonald
56k • written 3.7 years ago by
arbet003
▴ 10
0
votes
0
replies
386
views
Error when changing the database for minfi dropLociWithSnps
minfi
methylationepic
illuminahumanmethylationepicanno.ilmn10b.hg19
SNP
3.8 years ago
Ellen O
• 0
2
votes
1
reply
578
views
GenomicAlignments/access correct bp positions near indels
genomicranges
genomicalignments
snp
updated 3.9 years ago by
Hervé Pagès
14k • written 3.9 years ago by
Daniel.Berner@unibas.ch
▴ 90
3
votes
4
replies
667
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs
SNP
dbsnp
4.1 years ago
Ramiro Magno
▴ 100
1
vote
2
replies
2.0k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment
SNP
dnasequence
4.2 years ago
lordbleys
• 0
3
votes
3
replies
801
views
Retrieve SNP flanking sequences in biomaRt
biomart
snp
upstream_flank
downstream_flank
updated 4.4 years ago by
Mike Smith
★ 4.9k • written 4.4 years ago by
anajacintafernandes
▴ 20
0
votes
2
replies
772
views
injectSNPS only for common variants
snp
snplocs
updated 4.4 years ago by
Robert Castelo
★ 2.7k • written 4.4 years ago by
arubio
• 0
0
votes
3
replies
1.4k
views
Gramene now available via biomaRt
SNP
Transcription
biomaRt
Vega
SNP
Transcription
biomaRt
Vega
updated 4.5 years ago by
maialiaeb
• 0 • written 14.2 years ago by
Steffen Durinck
▴ 580
0
votes
0
replies
557
views
vizualization of mutations
genomes
SNP
4.6 years ago
Bogdan
▴ 610
0
votes
0
replies
627
views
Illumina Genotyping in parallel raise an error
crlmm
snp
illumina
4.8 years ago
nadne
▴ 10
1
vote
0
replies
1.5k
views
Job:
Bioinformatics Scientist @ Berlin Institute for Medical Systems Biology
rnaseq
snp
chipseq
Job
4.9 years ago
altuna akalin
▴ 20
0
votes
1
reply
732
views
Error with FunciSNP
snp
R
gwastools
5.0 years ago
musomilan
• 0
2
votes
3
replies
1.5k
views
ggbio circular plot
ggbio
SNP
granges
updated 5.3 years ago by
Michael Lawrence
11k • written 5.3 years ago by
Marcin Grzybowski
• 0
5
votes
9
replies
2.8k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber
snp
affymetrix
5.4 years ago
K
▴ 50
0
votes
1
reply
655
views
Distance measure used by snpgdsPCA in SNPRelate
snp
clustering
5.5 years ago
mattcott
• 0
1
vote
2
replies
1.2k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing
snp
updated 5.5 years ago by
Jan Oosting
▴ 20 • written 5.5 years ago by
markus.riester
• 0
0
votes
0
replies
600
views
News:
gwascat package updated: new features in devel branch
GWAS
genetic epidemiology
SNP
News
5.7 years ago
Vincent J. Carey, Jr.
6.3k
0
votes
2
replies
2.4k
views
Bioconductor 2.12 is released
BiocViews
aCGH
SNP
Transcription
Sequencing
Microarray
Coverage
Alignment
Annotation
GO
updated 5.8 years ago by
marksteve952
• 0 • written 8.0 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
6
replies
1.0k
views
dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
SNP
Cancer
SNPlocs
SNP
Cancer
SNPlocs
updated 5.8 years ago by
genefan
• 0 • written 11.9 years ago by
Hervé Pagès
14k
0
votes
1
reply
721
views
trouble with predictCoding( function
snp
variantannotation
predict coding
5.8 years ago
vakul.mohanty
▴ 10
0
votes
2
replies
2.5k
views
Pipeline for analyzing CNV (SNP array) level 3 from TCGA
SNP
CNV
TCGA
6.0 years ago
NS
▴ 60
0
votes
2
replies
3.0k
views
biomaRt: SNP no access to grch37.ensembl.org
SNP
biomart
archive
grch37
6.1 years ago
mrprao
• 0
0
votes
0
replies
887
views
DNAcopy default settings and SNP6.0 arrays
SNP
DNAcopy
SNP6.0
CNV
6.2 years ago
giovanni.dario
• 0
1
vote
6
replies
1.4k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs
snp
6.4 years ago
garrisrg
▴ 10
1
vote
2
replies
1.1k
views
biomaRt error message
biomaRt
snp
updated 6.4 years ago by
Thomas Maurel
▴ 790 • written 6.4 years ago by
Ting
▴ 10
0
votes
0
replies
1.0k
views
Any R Package To Detect Copy Neutral LOH for SNP 6.0 Array Data
microarray
affy
snp
6.5 years ago
sun
▴ 100
5
votes
5
replies
2.4k
views
SNP Function Information from biomaRt
biomart
snp
nonsynonymous
updated 6.5 years ago by
Sean Davis
21k • written 6.5 years ago by
Ting
▴ 10
0
votes
0
replies
811
views
ChIPpeakAnno
SNP
Annotation
annotate
convert
SNP
Annotation
annotate
convert
6.7 years ago
Julie Zhu
★ 4.3k
0
votes
6
replies
1.4k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 6.9 years ago by
Matthew Ritchie
▴ 990 • written 6.9 years ago by
Abhishek Pratap
▴ 160
0
votes
1
reply
1.5k
views
help with analysis of genotyping data from Illumina HumanOmni5-4v1_B chip
SNP
VariantAnnotation
Annotation
probe
VariantAnnotation
GWASTools
SNP
VariantAnnotation
updated 6.9 years ago by
Stephanie M. Gogarten
▴ 800 • written 6.9 years ago by
Abhishek Pratap
▴ 160
0
votes
1
reply
723
views
SNP ID mapping with oligo package (pd.genomewidesnp.6)
SNP
SNP
updated 6.9 years ago by
Vincent J. Carey, Jr.
6.3k • written 6.9 years ago by
Solip Park
▴ 10
0
votes
0
replies
629
views
SNP ID mapping with Oligo package
SNP
SNP
6.9 years ago
Guest User
★ 12k
0
votes
0
replies
829
views
minfi release 1.8
SNP
Annotation
GO
probe
SNPlocs
PROcess
minfi
bumphunter
ChAMP
SNP
Annotation
GO
probe
6.9 years ago
swarmqq@gmail.com
▴ 10
0
votes
1
reply
918
views
snpStats reference allele used in genetic associations?
SNP
Category
snpStats
SNP
Category
snpStats
updated 6.9 years ago by
Vincent J. Carey, Jr.
6.3k • written 6.9 years ago by
Guest User
★ 12k
0
votes
4
replies
1.3k
views
Help with sliding window analysis on GRanges object
SNP
IRanges
SNP
IRanges
updated 7.0 years ago by
Michael Lawrence
11k • written 7.0 years ago by
Vince S. Buffalo
▴ 140
333 results • Page
1 of 7
Recent ...
Replies
Answer: DepMap copy number
by
Laurent Gatto
1.5k
Hi Danny - sorry for the delay in answering, I hadn't set `depmap` as a tag yet. Yes, that bug has been fixed in the devel version.
Answer: High fold change reported for comparison of samples with zero values in all samp
by
James W. MacDonald
56k
The universal recommendation is to remove all genes with consistently low (or all zero) expression values prior to doing any modeling. It i…
Comment: Sample quality weights for RNA-seq
by
Naomi Altman
★ 6.0k
Thanks Michael. I'll try that. (Limma folks, I'd still love to hear from you.)
Answer: Installation error if message implemented in .Rprofile
by
Mike Smith
★ 4.9k
A similar issue has been reported recently for rhdf5filters (https://github.com/grimbough/rhdf5filters/issues/11) and rhdf5 (https://github…
Comment: Couldn't load org.Hs.eg.db
by
Xulei Huo
• 0
That does not work, i have tried it.
Votes
Answer: TargetsFile. Where it is?
Answer: TargetsFile. Where it is?
Comment: TargetsFile. Where it is?
Comment: Using DESeq2 to identify changing transcriptional activity in a metagenome
Answer: .onLoad failed in loadNamespace() for 'org.Hs.eg.db'
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