Showing : snp • reset
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167
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How to remove INDELS/SNPs from a bed file
SNP
updated 9 weeks ago by 62k • written 9 weeks ago by • 0
0
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0
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113
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Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
3 months ago m610110001 • 0
0
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0
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211
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ACMG Annotations for Variants in R
ACMG SNP
6 months ago hamza_karakurt ▴ 50
0
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1
reply
729
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
updated 11 months ago by 3.7k • written 11 months ago by • 0
0
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1
reply
441
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 12 months ago by ▴ 820 • written 14 months ago by • 0
0
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1
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354
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Get CHR & POS for a list of SNP rs ids (>1M)
POS CHR SNP rs
updated 15 months ago by 62k • written 15 months ago by • 0
0
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0
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437
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Reading Affymetrix Axiom files
affy SNP axiom
20 months ago f.calboli • 0
0
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0
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370
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Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
22 months ago Amber • 0
3
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2
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5.2k
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Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 2.5 years ago by 16k • written 2.5 years ago by • 0
5
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11
replies
987
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r biomart SNP annotation HUGO
updated 2.5 years ago by ★ 5.9k • written 2.5 years ago by • 0
2
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2
replies
1.5k
views
How to convert 1000 genomes VCF files to the format of traditional SNP array format?
SNP 1000genome
updated 2.6 years ago by 25k • written 2.6 years ago by ▴ 20
1
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2
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827
views
TCGA MAF (Mutations) data
TCGA MAF GDC snp mutations
updated 3.7 years ago by 21k • written 3.7 years ago by ▴ 160
0
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0
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506
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genetic and linkage maps construction
genetic map linkage maps SNP assembly GBS
4.0 years ago mictadlo ▴ 10
0
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0
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441
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R: estimating error rate of replicated samples
R SNP genotyping genetic diversity
4.0 years ago meriam.nef • 0
0
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0
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938
views
How to extract SNPs from multiple alignment fasta file?
snp multiple sequence alignment fasta Tutorial
updated 4.3 years ago by 25k • written 4.3 years ago by • 0
0
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11
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2.7k
views
SNP6 data to VCF
SNP oligo ASSIGN SNP oligo ASSIGN
updated 4.4 years ago by • 0 • written 11.0 years ago by 21k
0
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1
reply
675
views
Finding/Understanding Affy 6.0 Annotation File
affy affymetrix microarray SNP
4.5 years ago CantExitVIM ▴ 10
3
votes
5
replies
1.1k
views
Understanding PureCN and its germline SNPs
PureCN germline SNP
updated 4.7 years ago by • 0 • written 4.8 years ago by ▴ 10
0
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1
reply
1.4k
views
VCF file non-SNP germline mutations
PureCN VCF SNP
updated 4.8 years ago by ▴ 120 • written 4.8 years ago by ▴ 10
0
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3
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1.5k
views
dbSNP - getting details of Pubmed ID for a SNP
SNP SNP
updated 4.9 years ago by • 0 • written 13.1 years ago by ▴ 180
0
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1
reply
887
views
How to draw venn diagram with four CSV files
R SNP venn diagram
updated 5.0 years ago by 62k • written 5.0 years ago by • 0
0
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0
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529
views
Wtccc sanger dataset
SNP
5.0 years ago hadeel.alzoubi • 0
0
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1
reply
826
views
How to map a SNP to all genes within 50kb (upstream or downstream) of the SNP?
annotation R snp
updated 5.5 years ago by 62k • written 5.5 years ago by ▴ 10
0
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0
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632
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Error when changing the database for minfi dropLociWithSnps
minfi methylationepic illuminahumanmethylationepicanno.ilmn10b.hg19 SNP
5.6 years ago Ellen O • 0
2
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1
reply
852
views
GenomicAlignments/access correct bp positions near indels
genomicranges genomicalignments snp
updated 5.7 years ago by 16k • written 5.7 years ago by ▴ 90
3
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4
replies
1.0k
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs SNP dbsnp
5.9 years ago Ramiro Magno ▴ 100
1
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2
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2.7k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment SNP dnasequence
6.0 years ago lordbleys • 0
3
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3
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1.3k
views
Retrieve SNP flanking sequences in biomaRt
biomart snp upstream_flank downstream_flank
updated 6.2 years ago by ★ 5.9k • written 6.2 years ago by ▴ 20
0
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2
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1.1k
views
injectSNPS only for common variants
snp snplocs
updated 6.2 years ago by ★ 3.0k • written 6.2 years ago by • 0
0
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3
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1.8k
views
Gramene now available via biomaRt
SNP Transcription biomaRt Vega SNP Transcription biomaRt Vega
updated 6.3 years ago by • 0 • written 16.0 years ago by ▴ 580
0
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0
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800
views
vizualization of mutations
genomes SNP
6.4 years ago Bogdan ▴ 660
0
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0
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863
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Illumina Genotyping in parallel raise an error
crlmm snp illumina
6.6 years ago nadne ▴ 10
1
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0
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1.8k
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Job: Bioinformatics Scientist @ Berlin Institute for Medical Systems Biology
rnaseq snp chipseq Job
6.6 years ago altuna akalin ▴ 20
0
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1
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986
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Error with FunciSNP
snp R gwastools
6.8 years ago musomilan • 0
2
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3
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1.9k
views
ggbio circular plot
ggbio SNP granges
updated 7.1 years ago by 11k • written 7.1 years ago by • 0
5
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9
replies
3.4k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber snp affymetrix
7.2 years ago KB ▴ 50
0
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1
reply
860
views
Distance measure used by snpgdsPCA in SNPRelate
snp clustering
7.3 years ago mattcott • 0
1
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2
replies
1.6k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing snp
updated 7.3 years ago by ▴ 20 • written 7.3 years ago by • 0
0
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0
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829
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
7.5 years ago Vincent J. Carey, Jr. 6.6k
0
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2
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3.2k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 7.6 years ago by • 0 • written 9.8 years ago by ★ 8.2k
0
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6
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1.7k
views
dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
SNP Cancer SNPlocs SNP Cancer SNPlocs
updated 7.6 years ago by • 0 • written 13.7 years ago by 16k
0
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1
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954
views
trouble with predictCoding( function
snp variantannotation predict coding
7.6 years ago vakul.mohanty ▴ 10
0
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2
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2.9k
views
Pipeline for analyzing CNV (SNP array) level 3 from TCGA
SNP CNV TCGA
7.8 years ago NS ▴ 60
0
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2
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4.0k
views
biomaRt: SNP no access to grch37.ensembl.org
SNP biomart archive grch37
7.9 years ago mrprao • 0
0
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0
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1.1k
views
DNAcopy default settings and SNP6.0 arrays
SNP DNAcopy SNP6.0 CNV
8.0 years ago giovanni.dario • 0
1
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6
replies
1.7k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs snp
8.2 years ago garrisrg ▴ 10
1
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2
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1.4k
views
biomaRt error message
biomaRt snp
updated 8.2 years ago by ▴ 790 • written 8.2 years ago by ▴ 10
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0
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1.3k
views
Any R Package To Detect Copy Neutral LOH for SNP 6.0 Array Data
microarray affy snp
8.3 years ago sun ▴ 100
5
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5
replies
3.2k
views
SNP Function Information from biomaRt
biomart snp nonsynonymous
updated 8.3 years ago by 21k • written 8.3 years ago by ▴ 10
0
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0
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1.1k
views
ChIPpeakAnno
SNP Annotation annotate convert SNP Annotation annotate convert
8.5 years ago Julie Zhu ★ 4.3k
50 results • Page 1 of 1
Recent ...
Replies
Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site) by jeffbrick852 • 0
[us customer service][1] [1]: https://www.us-customer-service.com/
Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the by swbarnes2 ★ 1.2k
The vignette includes that in the design because the example is a mix of single and paired end reads, and that is added to the design so th…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
`PoolStatus` just indicates whether a sample is a pool or not, i.e., the first option.
Comment: How to map geneIds to ENTREZIDs by stacy.genovese • 0
James - I wish I knew where you lived so I could buy you a beer! Thank you so much for your help. I'm going to work now on converting th…
Answer: How to map geneIds to ENTREZIDs by James W. MacDonald 62k
You are close. But note that the geneIds in your `GRanges` object are NCBI Gene IDs, which used to be called Entrez Gene IDs, and which are…
Votes
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: How to map geneIds to ENTREZIDs
Comment: ComplexHeatmap - Default distance and hierarchical clustering methods
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Awards • All
Scholar to James W. MacDonald 62k
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Scholar to Mike Smith ★ 5.9k
Popular Question to shepherl 3.4k
Scholar to Gordon Smyth 47k
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