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News: Ensembl 78 release is out!
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gravatar for amonida
3.0 years ago by
amonida10
United Kingdom
amonida10 wrote:

Dear all,

Enembl e78 is out and along with it the following Biomart changes:

* Ensembl Genes 78
        Updated mouse assembly to GRCm38.p3
        Added "Transcript length" in the Features, Structures and Sequences pages of the attribute section
        Removed DN/DS attributes for species that don't have the data
        Added "Transcript Support Level (TSL)" to the attribute section
        Added "GENCODE basic annotation" to the attribute section
        Added "APPRIS principal isoform annotation" to the attribute section
        Added "Transcript Type" to the filter section
        Added QTL data for Horse
        Renamed "Gene biotype" and "Transcript biotype" to "Gene type" and "Transcript type" in the attribute section
* Ensembl Variation 78
        Updated mouse assembly to GRCm38.p3
        Added "Chromosome postition end (bp)" in filter and attribute sections (Short Variation datasets only)
        Added band filter to all the structural variation datasets
        Added marker filter to all the structural variation datasets
        Added default attributes for all the structural variation datasets
        Renamed the following attributes
            "1000 genomes global MAF (ALL) to "1000 genomes global Minor Allele Frequency (ALL)
            "1000 genomes global MAC (ALL) to "1000 genomes global Minor Allele Count (ALL)
            "Position on chromosome (bp) to "Chromosome position start (bp)"
            "sequence region start (bp)" to "Chromosome position start (bp)" (structural variation datasets only)
            "sequence region end (bp)" to "Chromosome position end (bp)" (structural variation datasets only)
* Ensembl Regulation 78
        Updated mouse assembly to GRCm38.p3
* Vega 58
        Updated mouse assembly to GRCm38.p3
        Added "Transcript Type" to the filter section

For the full details of the release please refer to http://www.ensembl.org/info/website/news.html.

Best regards,
Amonida

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