Showing : Ensembl • reset
0
votes
6
replies
101
views
Getting paralogus genes from biomart for mouse
biomart biomaRt Ensembl
updated 2 days ago by 3.2k • written 3 days ago by • 0
0
votes
2
replies
223
views
News: Ensembl 103 has been released
biomaRt ensembldb Ensembl ensemblVEP Biomart
5 months ago • updated 3 months ago mchakiachvili ▴ 10
1
vote
1
reply
147
views
topGO question
Ensembl ensembldb
updated 7 months ago by 57k • written 7 months ago by • 0
0
votes
0
replies
154
views
News: Ensembl 102 has been released
Ensembl biomaRt BioMar ensembldb
8 months ago mchakiachvili ▴ 10
4
votes
8
replies
2.8k
views
Ensembl site unresponsive
ensembl biomart
updated 3 months ago by • 0 • written 9 months ago by ▴ 30
2
votes
11
replies
1.4k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 6 months ago by ★ 5.0k • written 10 months ago by • 0
4
votes
17
replies
593
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 11 months ago by 3.2k • written 11 months ago by ▴ 10
0
votes
1
reply
273
views
News: Ensembl 101 hase been released
Ensembl BioMart News
11 months ago mchakiachvili ▴ 10
1
vote
3
replies
435
views
Convert mouse gene ids to hamster gene ids
biomart R ensembl
updated 3 months ago by 3.2k • written 12 months ago by • 0
1
vote
0
replies
218
views
News: ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl annotation ensembldb News
14 months ago Johannes Rainer ★ 1.9k
1
vote
0
replies
153
views
News: Ensembl 100 has been released
biomart ensembl e100 mart news News
15 months ago Thomas Maurel ▴ 790
0
votes
4
replies
169
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon tximport tximportdata ensembl
updated 15 months ago by 33k • written 15 months ago by • 0
1
vote
2
replies
533
views
getBM biomart ensembl Error report
biomaRt ensembl
updated 15 months ago by ★ 5.0k • written 15 months ago by • 0
0
votes
1
reply
256
views
ChIPSeeker with Ensembl IDs
chipseeker Ensembl EnsDb.Mmusculus.v79 ensembldb
15 months ago Assa Yeroslaviz ★ 1.5k
0
votes
2
replies
173
views
Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart mart ensembl
updated 16 months ago by 57k • written 16 months ago by • 0
0
votes
0
replies
103
views
News: Changes to BioMart in Ensembl release 100 and Ensembl Genomes release 47
biomaRt Ensembl News
17 months ago Astrid_Ensembl • 0
4
votes
4
replies
184
views
biomaRt getSequence fails with genomic coordinates
biomart getSequence genomic coordinates ENSEMBL bug report
updated 17 months ago by ★ 5.0k • written 17 months ago by ▴ 10
0
votes
1
reply
92
views
Question regarding retrieving miRNA sequences from ENSEMBLE
ensembl
updated 18 months ago by 33k • written 18 months ago by • 0
0
votes
0
replies
167
views
News: Ensembl 99 has been released and renaming of species
biomart ensembl e99 mart news News
18 months ago Thomas Maurel ▴ 790
4
votes
11
replies
401
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 19 months ago by ★ 2.7k • written 19 months ago by ▴ 10
1
vote
3
replies
767
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub Ensembl Mouse AnnotationHub Ensembl
19 months ago dmgatti ▴ 10
0
votes
14
replies
328
views
Error while opening Mart with biomaRt package
software error ensembl biomart
19 months ago loicborcard01 • 0
0
votes
6
replies
222
views
Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl biomaRt
updated 21 months ago by ★ 5.0k • written 21 months ago by ▴ 800
0
votes
7
replies
645
views
BioMart does not find mouse homologs of human genes
biomart homolog ortholog gene conversion ensembl
updated 21 months ago by 57k • written 21 months ago by ▴ 30
0
votes
0
replies
237
views
News: Ensembl 98 has been released and renaming of species
biomart ensembl e98 mart News
22 months ago Thomas Maurel ▴ 790
0
votes
1
reply
203
views
Eliminate redundancy in biomaRt (2.38.0) query
biomaRt Ensembl
updated 24 months ago by ★ 5.0k • written 24 months ago by • 0
0
votes
3
replies
332
views
external_gene_id attribute removed from new biomaRt version
biomaRt Ensembl Ensemblplants
2.0 years ago Didi ▴ 10
1
vote
0
replies
286
views
News: ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
annotation ensembldb Ensembl News
2.1 years ago Johannes Rainer ★ 1.9k
1
vote
0
replies
240
views
News: Ensembl 97 has been released
biomart ensembl e97 News
2.1 years ago James Allen ▴ 10
10
votes
8
replies
869
views
Best alternative annotation package to BiomaRt
R biomaRt Ensembl rnaseq
2.1 years ago m93 ▴ 10
0
votes
1
reply
308
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string
biomart ensembl R Bioconductor
2.1 years ago lbuo • 0
0
votes
4
replies
539
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 2.1 years ago by ★ 5.0k • written 2.1 years ago by • 0
3
votes
2
replies
335
views
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart geo software error ensembl
updated 2.1 years ago by ★ 5.0k • written 2.1 years ago by ▴ 10
1
vote
1
reply
266
views
Gene biotype for a given symbol
ensembl
updated 2.1 years ago by ★ 1.9k • written 2.1 years ago by • 0
1
vote
3
replies
692
views
Scan error using biomart getBM with version option and host set
biomart ensembl getbm
2.2 years ago Marc Saric ▴ 70
2
votes
0
replies
284
views
News: ensembl 96 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
updated 2.2 years ago by • 0 • written 2.3 years ago by 2.8k
6
votes
5
replies
1.6k
views
biomaRt Ensembl gene ID to multiple HGNC symbol
ensembl symbol hgnc biomart
updated 2.2 years ago by 57k • written 2.2 years ago by ▴ 60
0
votes
0
replies
266
views
News: Ensembl 96 has been released
ensembl biomart biomaRt e96 news News
2.3 years ago amonida ▴ 20
4
votes
5
replies
525
views
Getting CDSCHROM values from ENSEMBL/SYMBOL keys using mapIds from TxDb.Hsapiens.UCSC.hg19.knownGene
ensembl cdschrom org.Hs.eg.db AnnotationDbi SingleCellExperiment
updated 2.3 years ago by 57k • written 2.3 years ago by ▴ 10
0
votes
0
replies
330
views
News: ensembl 95 gtfs and fasta twobits have been added to AnnotationHub
annotationhub annotationdata ensembl gtf 2bit News
2.5 years ago shepherl 2.8k
0
votes
1
reply
414
views
News: Ensembl 95 has been released
ensembl biomart biomaRt e95 News
2.5 years ago Thomas Maurel ▴ 790
2
votes
3
replies
405
views
make TxDb from list of genes
R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl
2.6 years ago rtwest • 0
2
votes
1
reply
440
views
Ensemble and Entrez disconnected?
ensembl entrez biomart org.hs.eg.db
updated 2.6 years ago by 57k • written 2.6 years ago by • 0
0
votes
1
reply
386
views
Pick coding vs non-coding from Ensembl data set
R ensembl ensembldb noncoding rna protein coding
updated 2.7 years ago by ★ 1.9k • written 2.7 years ago by • 0
3
votes
6
replies
674
views
biomaRt: Ensembl -> Entrez conversion error?
biomart entrez gene identifiers ensembl conversion
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by ▴ 10
0
votes
3
replies
561
views
DESeq2: removal of duplicated genes during statistical analysis
deseq2 gene symbol ensembl
updated 2.7 years ago by 33k • written 2.7 years ago by ▴ 10
5
votes
10
replies
913
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 6 months ago by ★ 1.9k • written 2.7 years ago by ★ 3.0k
2
votes
3
replies
549
views
Problem for finding "Locus Link ID" from Annotation file
wgcna package TCGA LocusLinkID genecode ensembl
updated 2.8 years ago by 57k • written 2.8 years ago by ▴ 10
1
vote
7
replies
455
views
News: ensembl 94 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
2.8 years ago shepherl 2.8k
1
vote
1
reply
453
views
News: Ensembl 94 has been released
biomart release ensembl ensembl94 ensemblmart News
2.8 years ago Thomas Maurel ▴ 790
50 results • Page 1 of 1
Recent ...
Replies
Answer: How to extract DEG from limmarResults object after beadarray analysis by Gordon Smyth 43k
I am the limma package author, but I don't know how to help you. The beadarray package has done a standard limma analysis but, instead of s…
Comment: An error using Diffbind plotprofile by doug.barrows • 0
Hi there, it's hard to tell how to debug without having the data. Could you potentially send me the object you are attempting to use for th…
Comment: DESeq2 Shrinkage methods for scRNA-Seq by Pedro Tan • 0
Thanks Michael! I will stick to apeglm and incorporate alternate size factors for single cell data. All the best, Pedro
Answer: Macbook M1 install genefilter failed by soda ▴ 10
i have solved this problem by myself. share with you. you need to download gfortran in path /opt/R/arm64/bin this website helped me: **h…
Comment: Best practice for quantifying sncRNA by James W. MacDonald 57k
If you used the QIASeq miRNA library, then you are wasting your time. That library adds the UMI barcodes and is intended for you to then up…
Votes
Answer: Macbook M1 install genefilter failed
BioCAsia Virtual Meeting, 15-18 October 2020
Answer: Selecting pairs of exons from differentially spliced genes
Comment: Idea: Using DESeq2 to test a change in ratio of two genes
Time Series Analysis
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