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Ensembl
•
reset
3
votes
2
replies
179
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
16 days ago • updated 11 days ago
henrydionne
▴ 10
1
vote
2
replies
346
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
4 months ago
Miguel
• 0
7
votes
26
replies
4.1k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 7 weeks ago by
karenserrano
• 0 • written 5.0 years ago by
Guido Hooiveld
★ 3.8k
0
votes
2
replies
633
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt
ensembldb
RNA
ensembl
updated 8 months ago by
Johannes Rainer
★ 2.0k • written 8 months ago by
Christopher
• 0
5
votes
3
replies
1.1k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt
ensembldb
ensembl
13 months ago • updated 11 months ago
jamie.gearing
▴ 60
1
vote
2
replies
626
views
News:
Ensembl 108 has been released!
biomaRt
ensembldb
ensembl
written 13 months ago by
Louisse
▴ 10
0
votes
0
replies
508
views
biomaRt, Ensembl, retrieve "Phenotypes" information
Ensembl
biomaRt
16 months ago
Hector
• 0
7
votes
5
replies
5.5k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 8 weeks ago by
Ke
• 0 • written 19 months ago by
kieran.short
▴ 40
2
votes
0
replies
601
views
News:
News:Ensembl 106 has just been released!
ensembl
biomaRt
ensembldb
20 months ago
Benjamin
▴ 20
2
votes
3
replies
1.1k
views
Ensembl non responsive
ensembl
R
20 months ago
ksci
▴ 20
2
votes
1
reply
843
views
Can Rsubread output use Ensembl gene IDs
Ensembl
Rsubread
updated 20 months ago by
Gordon Smyth
49k • written 20 months ago by
agustin.gonvi
▴ 20
8
votes
9
replies
4.6k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 22 months ago by
Hervé Pagès
16k • written 22 months ago by
jon.klonowski
▴ 40
0
votes
3
replies
1.1k
views
biomaRT getBM() get stuck
biomaRt
getbm
ensembl
updated 23 months ago by
Mike Smith
★ 6.2k • written 23 months ago by
Ariel Simon
• 0
1
vote
0
replies
689
views
News:
Ensembl 105 has just been released!
ensembl
biomaRt
ensembldb
24 months ago
mchakiachvili
▴ 20
15
votes
13
replies
2.6k
views
celldex ensembl gene annotation issue
SingleR
celldex
HumanPrimaryCellAtlasData
ensembl
updated 2.1 years ago by
xiang
▴ 10 • written 2.1 years ago by
immuno.dh
▴ 20
0
votes
6
replies
1.5k
views
Getting paralogus genes from biomart for mouse
biomart
biomaRt
Ensembl
updated 2.4 years ago by
Kevin Blighe
3.9k • written 2.4 years ago by
hemantcnaik
• 0
0
votes
2
replies
1.2k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
2.8 years ago • updated 2.6 years ago
mchakiachvili
▴ 20
1
vote
1
reply
1.1k
views
topGO question
Ensembl
ensembldb
updated 3.0 years ago by
James W. MacDonald
64k • written 3.0 years ago by
H. Stotz
• 0
0
votes
0
replies
685
views
News:
Ensembl 102 has been released
Ensembl
biomaRt
BioMar
ensembldb
3.0 years ago
mchakiachvili
▴ 20
4
votes
8
replies
12k
views
Ensembl site unresponsive
ensembl
biomart
updated 2.6 years ago by
tommaso.gastaldi
• 0 • written 3.2 years ago by
lirongrossmann
▴ 40
2
votes
11
replies
5.3k
views
biomaRT connexion problem make failed my unit tests
biomaRt
Peer's Certificate
Ensembl
updated 2.9 years ago by
Mike Smith
★ 6.2k • written 3.2 years ago by
ilysR
• 0
4
votes
17
replies
2.1k
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt
annotation
Ensembl
annotationHub
updated 3.3 years ago by
Kevin Blighe
3.9k • written 3.3 years ago by
Didi
▴ 10
0
votes
1
reply
836
views
News:
Ensembl 101 hase been released
Ensembl
BioMart
News
3.3 years ago
mchakiachvili
▴ 20
1
vote
3
replies
2.2k
views
Convert mouse gene ids to hamster gene ids
biomart
R
ensembl
updated 9 months ago by
Kevin Blighe
3.9k • written 3.4 years ago by
rykerklie7
• 0
1
vote
0
replies
988
views
News:
ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl
annotation
ensembldb
News
3.6 years ago
Johannes Rainer
★ 2.0k
1
vote
0
replies
687
views
News:
Ensembl 100 has been released
biomart
ensembl
e100
mart
news
News
3.6 years ago
Thomas Maurel
▴ 800
0
votes
4
replies
929
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon
tximport
tximportdata
ensembl
updated 3.6 years ago by
Michael Love
41k • written 3.6 years ago by
slouis
• 0
1
vote
2
replies
1.3k
views
getBM biomart ensembl Error report
biomaRt
ensembl
updated 3.6 years ago by
Mike Smith
★ 6.2k • written 3.6 years ago by
nina.hahn
▴ 10
0
votes
1
reply
1.4k
views
ChIPSeeker with Ensembl IDs
chipseeker
Ensembl
EnsDb.Mmusculus.v79
ensembldb
3.7 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.7k
views
Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart
mart
ensembl
updated 3.7 years ago by
James W. MacDonald
64k • written 3.7 years ago by
didemdkn
• 0
0
votes
0
replies
485
views
News:
Changes to BioMart in Ensembl release 100 and Ensembl Genomes release 47
biomaRt
Ensembl
News
3.8 years ago
Astrid_Ensembl
• 0
4
votes
4
replies
1.4k
views
biomaRt getSequence fails with genomic coordinates
biomart
getSequence
genomic coordinates
ENSEMBL
bug report
updated 3.8 years ago by
Mike Smith
★ 6.2k • written 3.8 years ago by
Ni-Ar
▴ 10
0
votes
1
reply
564
views
Question regarding retrieving miRNA sequences from ENSEMBLE
ensembl
updated 3.9 years ago by
Michael Love
41k • written 3.9 years ago by
mohsamir2016
• 0
0
votes
0
replies
615
views
News:
Ensembl 99 has been released and renaming of species
biomart
ensembl
e99
mart
news
News
3.9 years ago
Thomas Maurel
▴ 800
4
votes
11
replies
1.6k
views
Dealing with duplicated genes in camera gene set testing
limma
camera
gene set testing
ensembl
updated 4.0 years ago by
Robert Castelo
★ 3.0k • written 4.0 years ago by
Jeremy Beales
▴ 10
1
vote
3
replies
2.1k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
4.0 years ago
dmgatti
▴ 10
0
votes
14
replies
1.4k
views
Error while opening Mart with biomaRt package
software error
ensembl
biomart
4.0 years ago
loicborcard01
• 0
0
votes
6
replies
801
views
Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl
biomaRt
updated 4.2 years ago by
Mike Smith
★ 6.2k • written 4.2 years ago by
swbarnes2
★ 1.3k
0
votes
7
replies
2.3k
views
BioMart does not find mouse homologs of human genes
biomart
homolog
ortholog
gene conversion
ensembl
updated 4.2 years ago by
James W. MacDonald
64k • written 4.2 years ago by
atakanekiz
▴ 30
0
votes
0
replies
762
views
News:
Ensembl 98 has been released and renaming of species
biomart
ensembl
e98
mart
News
4.2 years ago
Thomas Maurel
▴ 800
0
votes
1
reply
641
views
Eliminate redundancy in biomaRt (2.38.0) query
biomaRt
Ensembl
updated 4.3 years ago by
Mike Smith
★ 6.2k • written 4.3 years ago by
olibee1315
• 0
0
votes
3
replies
1.2k
views
external_gene_id attribute removed from new biomaRt version
biomaRt
Ensembl
Ensemblplants
4.4 years ago
Didi
▴ 10
1
vote
0
replies
749
views
News:
ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
annotation
ensembldb
Ensembl
News
4.4 years ago
Johannes Rainer
★ 2.0k
1
vote
0
replies
696
views
News:
Ensembl 97 has been released
biomart
ensembl
e97
News
4.4 years ago
James Allen
▴ 10
10
votes
8
replies
2.5k
views
Best alternative annotation package to BiomaRt
R
biomaRt
Ensembl
rnaseq
4.4 years ago
m93
▴ 10
0
votes
1
reply
912
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string
biomart
ensembl
R
Bioconductor
4.5 years ago
lbuo
• 0
0
votes
4
replies
1.2k
views
Error message: "Request to BioMart web service failed."
BiocManager
biomaRt
listMarts()
ensembl
Biomart
updated 4.5 years ago by
Mike Smith
★ 6.2k • written 4.5 years ago by
ktd2918
• 0
3
votes
2
replies
1.0k
views
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart
geo
software error
ensembl
updated 4.5 years ago by
Mike Smith
★ 6.2k • written 4.5 years ago by
wes
▴ 10
1
vote
1
reply
874
views
Gene biotype for a given symbol
ensembl
updated 4.5 years ago by
Johannes Rainer
★ 2.0k • written 4.5 years ago by
adai
• 0
1
vote
3
replies
1.4k
views
Scan error using biomart getBM with version option and host set
biomart
ensembl
getbm
4.5 years ago
Marc Saric
▴ 70
50 results • Page
1 of 1
Recent ...
Replies
Comment: enrichGOgradient color change
by
James W. MacDonald
64k
You could look at my answer and extrapolate from there.
Comment: enrichGOgradient color change
by
WU
• 0
I would like to ask how to make the counts legend black. Thank you.
Answer: Problems with FLOWAI
by
Alexander
• 0
Hi. The length of the file path, or whether the files are local on the computer has nothing to do with it in my experience. I watched the a…
Answer: Asses fit of variance prior
by
Gordon Smyth
49k
> is it advisable to asses the fit of the variance prior before running limma? No, neither necessary nor possible. If this sort of checki…
Comment: rDGIdb package inconsistency with web interface
by
James W. MacDonald
64k
This is what I see when I go to the link you provide. ![enter image description here][1] But anyway, I cannot speak for the maintainers, …
Votes
Answer: enrichGOgradient color change
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
How to know if I should use voomWithQualityWeights() or not?
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▴ 10
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