I am trying to install hgu95av2.db because hgu95av2 has been deprecated (and doesn't work any more)
installation fails because org.Hs.eg.db does not work:
> biocLite("hgu95av2.db")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.13 (BiocInstaller 1.12.1), R version
3.0.2.
Installing package(s) 'hgu95av2.db'
also installing the dependency ‘org.Hs.eg.db’
trying URL 'http://bioconductor.org/packages/2.13/data/annotation/src/contrib/org.Hs.eg.db_2.10.1.tar.gz'
Content type 'application/x-gzip' length 55283579 bytes (52.7 Mb)
opened URL
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downloaded 52.7 Mb
trying URL 'http://bioconductor.org/packages/2.13/data/annotation/src/contrib/hgu95av2.db_2.10.1.tar.gz'
Content type 'application/x-gzip' length 507281 bytes (495 Kb)
opened URL
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downloaded 495 Kb
* installing *source* package ‘org.Hs.eg.db’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
call: match.arg(synchronous, c("off", "normal", "full"))
error: 'arg' must be NULL or a character vector
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/gerald/R/x86_64-pc-linux-gnu-library/3.0/org.Hs.eg.db’
ERROR: dependency ‘org.Hs.eg.db’ is not available for package ‘hgu95av2.db’
* removing ‘/home/gerald/R/x86_64-pc-linux-gnu-library/3.0/hgu95av2.db’
