Question: Problem with gene annotation used in chimera package for fusion analysis
gravatar for richa_r
4.1 years ago by
United States
richa_r0 wrote:


I have used STAR aligner followed by Chimera package for further filtering with the aim to detect fusion genes. Now the issue is that I have used hg19 genome reference and Gencode v19 for annotation in STAR. But, perhaps the annotation used in Chimera (possibly UCSC known gene) is not the same. Can anyone suggest me how to modify the annotation used in Chimera tool? Can I use Gencode annotation in Chimera package?

ADD COMMENTlink modified 4.1 years ago • written 4.1 years ago by richa_r0
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