Problem with gene annotation used in chimera package for fusion analysis
0
0
Entering edit mode
richa_r • 0
@richa_r-7433
Last seen 9.0 years ago
United States

hi

I have used STAR aligner followed by Chimera package for further filtering with the aim to detect fusion genes. Now the issue is that I have used hg19 genome reference and Gencode v19 for annotation in STAR. But, perhaps the annotation used in Chimera (possibly UCSC known gene) is not the same. Can anyone suggest me how to modify the annotation used in Chimera tool? Can I use Gencode annotation in Chimera package?

chimera package fusion genes annotation • 966 views
ADD COMMENT

Login before adding your answer.

Traffic: 803 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6