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Question: how to handle missing data for SampleTable in DESeq2
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gravatar for anpham
2.2 years ago by
anpham0
anpham0 wrote:

I have RNAseq data for human subjects and plan to do a differential gene expression analysis using DESeq2. The covariates I plan to use include sex, age, genotypic principal components, and substance use. However, I have missing data for principal components and substance use and would like to know how to code these missing data in the SampleTable. Can I put "." for missing data or would I have to take out the subjects with missing data? Thanks. 

ADD COMMENTlink modified 2.2 years ago by Michael Love12k • written 2.2 years ago by anpham0
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gravatar for Michael Love
2.2 years ago by
Michael Love12k
United States
Michael Love12k wrote:
Hi, Unfortunately we don't have any support for inference on covariates with missing data. You'd have to remove those subjects.
ADD COMMENTlink modified 2.2 years ago • written 2.2 years ago by Michael Love12k
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