Showing : missing data • reset
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Missing Clinical LIHC Data
Missing Data TCGAbiolinks Kaplan-Meier LIHC Xenabrowser
2.2 years ago jam526 • 0
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4
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1.8k
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how to handle missing data for SampleTable in DESeq2
deseq2 sample_table missing data
updated 3.0 years ago by • 0 • written 6.8 years ago by ▴ 30
0
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1
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499
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DESeq2 paired design with missing samples and multiple conditions
deseq2 paired samples missing data multiple treatments
updated 3.2 years ago by 35k • written 3.2 years ago by • 0
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13
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1.5k
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handling missing data (NA) for methylaion analysis in Limma
limma missing data methylation normalization
updated 4.2 years ago by ★ 27k • written 4.2 years ago by ▴ 10
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5
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Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma contrast missing data lmfit makecontrasts
updated 4.4 years ago by 44k • written 4.4 years ago by ▴ 10
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imputing data using pcaMethods with large amounts of missing data in rows
pcamethods missing data
4.8 years ago eli-sava • 0
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5
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4.8k
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Wgcna with missing values - error with calculation of bicor correlations in pickSoftThreshold and blockwiseModules
software error rnaseq wgcna missing data
6.1 years ago • updated 5.7 years ago dvillarlozano ▴ 10
0
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Web CellHTS2 data upload
cellhts2 upload missing data
updated 6.0 years ago by ▴ 160 • written 6.0 years ago by • 0
1
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675
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filter rows by missing values frequency
missing data filter
updated 6.1 years ago by 58k • written 6.1 years ago by • 0
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Possible methodologies for missing value imputation of continuous variables in a data frame in R
missing data missing value imputation impute MICE bioconductor
6.3 years ago svlachavas ▴ 780
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workflowInstall issues; missing Windows binary
software error missing data workflowinstall
6.7 years ago anoll2 • 0
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baySeq missing data
bayseq missing data
6.7 years ago k.w.lau • 0
12 results • Page 1 of 1
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Answer: airway package not compatible with R version 4.1.2 (2021-11-01) by ATpoint ▴ 970
`data(airway)` is your friend. The CRAN error comes from the fact that it is not a CRAN package, not that it is a version problem itself.
Comment: airway package not compatible with R version 4.1.2 (2021-11-01) by Lluís Revilla Sancho ▴ 660
I think it would help if you try again to install it via `BiocManager::install("airway")` and report the exact text output (without quittin…
Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data by Michael Love 35k
This looks as expected with the control genes centered on the x-axis (yes, these can have high variance, this is discussed in work by Risso…
Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data by argonvibio • 0
Hello Michael, and thank you for your reply. I have done as you described, estimating size factors with controlGenes before DESeq, but the…
Answer: DiffBind issue: zero values for all peaks in one chromosome by Rory Stark ★ 4.3k
Losing the reads for one tissue on one chromosome doesn't sound too good! I notice that you are using `DiffBind_3.0`, which is out of da…
Votes
Emirical Bayesian shrinkage for dispertion/LFC estimation
C: Emirical Bayesian shrinkage for dispertion/LFC estimation
A: Emirical Bayesian shrinkage for dispertion/LFC estimation
Comment: airway package not compatible with R version 4.1.2 (2021-11-01)
Comment: universalmotif, question about enrich_motifs function and number of hits returne
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