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missing data
•
reset
1
vote
3
replies
1.4k
views
Missing Clinical LIHC Data
Missing Data
TCGAbiolinks
Kaplan-Meier
LIHC
Xenabrowser
4.4 years ago • updated 4.3 years ago
jam526
• 0
0
votes
4
replies
2.8k
views
how to handle missing data for SampleTable in DESeq2
deseq2
sample_table
missing data
updated 5.2 years ago by
g.wang2
• 0 • written 9.0 years ago by
anpham
▴ 60
0
votes
1
reply
1.2k
views
DESeq2 paired design with missing samples and multiple conditions
deseq2
paired samples
missing data
multiple treatments
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
greg.deakin
• 0
0
votes
13
replies
2.3k
views
handling missing data (NA) for methylaion analysis in Limma
limma
missing data
methylation
normalization
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
mheydarpour
▴ 10
2
votes
5
replies
2.3k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma
contrast
missing data
lmfit
makecontrasts
updated 6.5 years ago by
Gordon Smyth
50k • written 6.6 years ago by
wewolski
▴ 10
0
votes
0
replies
799
views
imputing data using pcaMethods with large amounts of missing data in rows
pcamethods
missing data
7.0 years ago
eli-sava
• 0
3
votes
5
replies
7.5k
views
Wgcna with missing values - error with calculation of bicor correlations in pickSoftThreshold and blockwiseModules
software error
rnaseq
wgcna
missing data
8.3 years ago • updated 7.9 years ago
dvillarlozano
▴ 10
0
votes
1
reply
968
views
Web CellHTS2 data upload
cellhts2
upload
missing data
updated 8.1 years ago by
Joseph Barry
▴ 160 • written 8.1 years ago by
zmorehouse
• 0
1
vote
1
reply
996
views
filter rows by missing values frequency
missing data
filter
updated 8.3 years ago by
James W. MacDonald
65k • written 8.3 years ago by
rgescudero
• 0
0
votes
0
replies
1.4k
views
Possible methodologies for missing value imputation of continuous variables in a data frame in R
missing data
missing value imputation
impute
MICE
bioconductor
8.4 years ago
svlachavas
▴ 830
0
votes
1
reply
1.4k
views
workflowInstall issues; missing Windows binary
software error
missing data
workflowinstall
8.9 years ago
anoll2
• 0
0
votes
0
replies
1.3k
views
baySeq missing data
bayseq
missing data
8.9 years ago
k.w.lau
• 0
12 results • Page
1 of 1
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Replies
Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Votes
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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