Bioconductor Missing data

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Missing Data TCGAbiolinks Kaplan-Meier LIHC Xenabrowser

4.4 years ago jam526 • 0

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2.8k

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deseq2 sample_table missing data

updated 5.2 years ago by g.wang2 • 0 • written 9.1 years ago by anpham ▴ 60

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deseq2 paired samples missing data multiple treatments

updated 5.4 years ago by Michael Love 41k • written 5.4 years ago by greg.deakin • 0

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2.4k

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limma missing data methylation normalization

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by mheydarpour ▴ 10

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2.3k

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limma contrast missing data lmfit makecontrasts

updated 6.6 years ago by Gordon Smyth 50k • written 6.7 years ago by wewolski ▴ 10

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816

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pcamethods missing data

7.0 years ago eli-sava • 0

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software error rnaseq wgcna missing data

8.3 years ago • updated 8.0 years ago dvillarlozano ▴ 10

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988

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cellhts2 upload missing data

updated 8.2 years ago by Joseph Barry ▴ 160 • written 8.2 years ago by zmorehouse • 0

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1.0k

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missing data filter

updated 8.4 years ago by James W. MacDonald 65k • written 8.4 years ago by rgescudero • 0

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1.5k

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missing data missing value imputation impute MICE bioconductor

8.5 years ago svlachavas ▴ 830

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1.4k

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software error missing data workflowinstall

8.9 years ago anoll2 • 0

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1.3k

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bayseq missing data

9.0 years ago k.w.lau • 0

12 results • Page 1 of 1

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Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k

I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…

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Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

DESeq2 variance transformation error and plot dispersion Estimate

A: DESeq2 variance transformation error and plot dispersion Estimate

ensembl to hgnc symbols creates duplicates

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