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missing data
•
reset
1
vote
3
replies
961
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Missing Clinical LIHC Data
Missing Data
TCGAbiolinks
Kaplan-Meier
LIHC
Xenabrowser
3.2 years ago
jam526
• 0
0
votes
4
replies
2.2k
views
how to handle missing data for SampleTable in DESeq2
deseq2
sample_table
missing data
updated 4.0 years ago by
g.wang2
• 0 • written 7.9 years ago by
anpham
▴ 40
0
votes
1
reply
766
views
DESeq2 paired design with missing samples and multiple conditions
deseq2
paired samples
missing data
multiple treatments
updated 4.2 years ago by
Michael Love
39k • written 4.2 years ago by
greg.deakin
• 0
0
votes
13
replies
1.9k
views
handling missing data (NA) for methylaion analysis in Limma
limma
missing data
methylation
normalization
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
mheydarpour
▴ 10
2
votes
5
replies
1.8k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma
contrast
missing data
lmfit
makecontrasts
updated 5.4 years ago by
Gordon Smyth
47k • written 5.5 years ago by
wewolski
▴ 10
0
votes
0
replies
630
views
imputing data using pcaMethods with large amounts of missing data in rows
pcamethods
missing data
5.8 years ago
eli-sava
• 0
3
votes
5
replies
5.9k
views
Wgcna with missing values - error with calculation of bicor correlations in pickSoftThreshold and blockwiseModules
software error
rnaseq
wgcna
missing data
7.2 years ago • updated 6.8 years ago
dvillarlozano
▴ 10
0
votes
1
reply
743
views
Web CellHTS2 data upload
cellhts2
upload
missing data
updated 7.0 years ago by
Joseph Barry
▴ 160 • written 7.0 years ago by
zmorehouse
• 0
1
vote
1
reply
808
views
filter rows by missing values frequency
missing data
filter
updated 7.2 years ago by
James W. MacDonald
62k • written 7.2 years ago by
rgescudero
• 0
0
votes
0
replies
1.2k
views
Possible methodologies for missing value imputation of continuous variables in a data frame in R
missing data
missing value imputation
impute
MICE
bioconductor
7.3 years ago
svlachavas
▴ 800
0
votes
1
reply
1.1k
views
workflowInstall issues; missing Windows binary
software error
missing data
workflowinstall
7.7 years ago
anoll2
• 0
0
votes
0
replies
1.0k
views
baySeq missing data
bayseq
missing data
7.8 years ago
k.w.lau
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: TCGA: clinical data and expression data
by
sharifnstu1203002m
• 0
Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
by
Jonathan Göke
▴ 40
Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
by
Gordon Smyth
47k
Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user)
by
lalanis1
• 0
Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani
Comment: Nested paired design with covariates in limma
by
Gordon Smyth
47k
Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…
Votes
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
C: Can't install TopmedPipeline Package
Comment: Question about GWASTools gdsSubset
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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James W. MacDonald
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Michael Love
39k
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Gordon Smyth
47k
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Bogdan
▴ 660
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Martin Morgan
25k
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