Question

a package for read.fasta

0

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Angel ▴ 40

@angel-7981

Last seen 7.1 years ago

Berlin

sorry guys,

you know another package to read.fasta in rstudio because i could not install seqinr

thanks

seqinr fasta • 3.7k views

ADD COMMENT • link updated 8.7 years ago by Hervé Pagès 16k • written 8.7 years ago by Angel ▴ 40

score 2 · Accepted Answer · 2015-08-26

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Mike Smith ★ 6.5k

@mike-smith

Last seen 10 hours ago

EMBL Heidelberg

The ShortRead package (http://bioconductor.org/packages/ShortRead/) contains the function readFasta() which might be of use.

ADD COMMENT • link 8.7 years ago Mike Smith ★ 6.5k

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thanks both Mike and Herve

ADD REPLY • link 8.7 years ago Angel ▴ 40

score 2 · Accepted Answer · 2015-08-27

2

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Hervé Pagès 16k

@herve-pages-1542

Last seen 12 hours ago

Seattle, WA, United States

Hi,

You can also have a look at the readDNAStringSet() function in the Biostrings package, which ShortRead::readFasta() is based on.

Cheers,

H.

ADD COMMENT • link 8.7 years ago Hervé Pagès 16k