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seqinr
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Seqinr for FASTQ files?
fastq
fast
seqinr
updated 4 months ago by
ATpoint
★ 1.4k • written 4 months ago by
hank00000
• 0
0
votes
0
replies
595
views
Match peptide within protein sequence fasta and extract position information based on protein sequence
R
seqinr
biostrings
3.9 years ago
rabalski
• 0
0
votes
1
reply
405
views
SeqinR socketConnection error help?
seqinr
updated 4.0 years ago by
Martin Morgan
25k • written 4.0 years ago by
daviqd.halvorsen
• 0
0
votes
0
replies
595
views
Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql
fastq
seqinr
ngs
sangerseqr
4.3 years ago
JoeMG
• 0
2
votes
1
reply
3.3k
views
Reading fasta file with multiple sequences
multiple sequences
bioconductor
rstudio
seqinr
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
Riot
• 0
1
vote
1
reply
726
views
Given a multifasta file and for each sequence, shuffle middle part of the sequence leaving the flanks intact and the opposite
shuffle
regioner
seqinr
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
Dimitris Polychronopoulos
▴ 70
1
vote
7
replies
2.3k
views
seqinr package - choosebank() function not connecting
seqinr
choose bank
error message
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
jayanthisahithi
▴ 10
4
votes
3
replies
2.6k
views
a package for read.fasta
seqinr
fasta
updated 7.0 years ago by
Hervé Pagès
15k • written 7.0 years ago by
Angel
▴ 40
8 results • Page
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Comment: DEXseq error unable to find an inherited method for function NSBS for signature
by
ta_awwad
▴ 10
Hi there, did you manage to solve this problem? thanks TA
Comment: Error in Create switchAnalyzeRlist
by
k.vitting.seerup
▴ 120
I just double checked and the fasta files found [here][1] should work. Please also take a look at [this][2] if you want to use Ensembl. …
Answer: Correlation between two different datasets: between results of RNAseq and absenc
by
Michael Love
37k
Re: LFC, if you are working with this and then downstream analysis, I'd recommend `lfcShrink` if you aren't already using this. It will shr…
Answer: Strange Dispersion plot
by
Michael Love
37k
This indeed looks strange, I would immediately suspect some weird batch effects. Try all kinds of diagnostic plots like, boxplot, PCA, corr…
Answer: Correlation between CpG methylation and gene expression from DESeq2-> Normalizat
by
Michael Love
37k
In this case, can you say why you want to normalize for gene length? In our tximport/tximeta pipeline, it would correct for differential ge…
Votes
Answer: Error in Create switchAnalyzeRlist
Answer: Error in Create switchAnalyzeRlist
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
Answer: the difference between getGEO and getGEOSuppFiles
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