Biostar Seqinr

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votes

194

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fastq fast seqinr

updated 4 months ago by ATpoint ★ 1.4k • written 4 months ago by hank00000 • 0

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replies

595

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R seqinr biostrings

3.9 years ago rabalski • 0

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405

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seqinr

updated 4.0 years ago by Martin Morgan 25k • written 4.0 years ago by daviqd.halvorsen • 0

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595

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rmysql fastq seqinr ngs sangerseqr

4.3 years ago JoeMG • 0

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3.3k

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multiple sequences bioconductor rstudio seqinr

updated 5.5 years ago by Martin Morgan 25k • written 5.5 years ago by Riot • 0

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726

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shuffle regioner seqinr

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by Dimitris Polychronopoulos ▴ 70

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2.3k

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seqinr choose bank error message

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by jayanthisahithi ▴ 10

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2.6k

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seqinr fasta

updated 7.0 years ago by Hervé Pagès 15k • written 7.0 years ago by Angel ▴ 40

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Comment: DEXseq error unable to find an inherited method for function NSBS for signature by ta_awwad ▴ 10

Hi there, did you manage to solve this problem? thanks TA

Comment: Error in Create switchAnalyzeRlist by k.vitting.seerup ▴ 120

I just double checked and the fasta files found [here][1] should work. Please also take a look at [this][2] if you want to use Ensembl. …

Answer: Correlation between two different datasets: between results of RNAseq and absenc by Michael Love 37k

Re: LFC, if you are working with this and then downstream analysis, I'd recommend `lfcShrink` if you aren't already using this. It will shr…

Answer: Strange Dispersion plot by Michael Love 37k

This indeed looks strange, I would immediately suspect some weird batch effects. Try all kinds of diagnostic plots like, boxplot, PCA, corr…

Answer: Correlation between CpG methylation and gene expression from DESeq2-> Normalizat by Michael Love 37k

In this case, can you say why you want to normalize for gene length? In our tximport/tximeta pipeline, it would correct for differential ge…

Votes

Answer: Error in Create switchAnalyzeRlist

A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge

DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol

Answer: the difference between getGEO and getGEOSuppFiles

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