Question: ChIPpeakAnno (makeVennDiagram) giving different results than before
0
gravatar for R.A. Tomaz
3.7 years ago by
R.A. Tomaz0
Imperial College London
R.A. Tomaz0 wrote:

Hello, 

I was wondering if there has been any recent change in the makeVennDiagram function of ChIPpeakAnno? I have made some venn diagrams with me BED files a couple of months ago, and now when I repeat using the same input files and same code I get very different results. Any clue?

Thank you,

Rute

chippeakanno venn diagram • 511 views
ADD COMMENTlink modified 3.7 years ago by Ou, Jianhong1.1k • written 3.7 years ago by R.A. Tomaz0
Answer: ChIPpeakAnno (makeVennDiagram) giving different results than before
0
gravatar for Ou, Jianhong
3.7 years ago by
Ou, Jianhong1.1k
United States
Ou, Jianhong1.1k wrote:

Hi Rute,

Thank you for selecting ChIPpeakAnno as your annotation tool.

We have multiple test files to make sure the output of ChIPpeakAnno::makeVennDiagram to be correct. That is to say the output of  ChIPpeakAnno will always be checked when it builds.

In case there is anything I missed to check, could you kindly provide me the BED files you are using and the exactly data of the venn diagram you generated?  So I can double check the code.

Thank you.

ADD COMMENTlink written 3.7 years ago by Ou, Jianhong1.1k

Hi Jianhong,

Thank you for your reply.

I am sorry but this is my first time using the Bioconductor support page. How can I send you the BED files?

Regards,

Rute

ADD REPLYlink written 3.7 years ago by R.A. Tomaz0

You can find my email address at http://bioconductor.org/packages/release/bioc/html/ChIPpeakAnno.html. Thank you.

ADD REPLYlink written 3.7 years ago by Ou, Jianhong1.1k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 292 users visited in the last hour