ChIPpeakAnno (makeVennDiagram) giving different results than before
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R.A. Tomaz • 0
@ra-tomaz-9185
Last seen 5.9 years ago
Imperial College London

Hello, 

I was wondering if there has been any recent change in the makeVennDiagram function of ChIPpeakAnno? I have made some venn diagrams with me BED files a couple of months ago, and now when I repeat using the same input files and same code I get very different results. Any clue?

Thank you,

Rute

chippeakanno venn diagram • 706 views
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Ou, Jianhong ★ 1.2k
@ou-jianhong-4539
Last seen 10 weeks ago
United States

Hi Rute,

Thank you for selecting ChIPpeakAnno as your annotation tool.

We have multiple test files to make sure the output of ChIPpeakAnno::makeVennDiagram to be correct. That is to say the output of  ChIPpeakAnno will always be checked when it builds.

In case there is anything I missed to check, could you kindly provide me the BED files you are using and the exactly data of the venn diagram you generated?  So I can double check the code.

Thank you.

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Hi Jianhong,

Thank you for your reply.

I am sorry but this is my first time using the Bioconductor support page. How can I send you the BED files?

Regards,

Rute

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You can find my email address at http://bioconductor.org/packages/release/bioc/html/ChIPpeakAnno.html. Thank you.

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