Error in Using Uniport.ws library
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beingseema03 ▴ 10
@beingseema03-8707
Last seen 8.9 years ago
India

Hi all,

I am using uniport.ws library for retrieving uniport web services of Human dataset. But when i run the function

up = UniProt.ws(taxId = 9606) then it gives this error

Error in file(con, "r") : cannot open the connection
In addition: Warning message:
In file(con, "r") :
  cannot open URL 'http://www.UniProt.org/UniProt/?query=organism:9606&format=tab&columns=id': HTTP status was '301 Moved Permanently'.

Even after setting internet to true this function does not work. Please provide any help.

bioconductor uniprot.ws • 1.9k views
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Entering edit mode
@martin-morgan-1513
Last seen 4 months ago
United States

The URL should not have capitalization; this is fixed in version 2.10.2, which should be available via biocLite() at this time tomorrow. A temporary solution is to use

fixInNamespace(".getUniprots", "UniProt.ws")

and write the URL with all lower-case letters.

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