Question: Error in installing multiClust package
1
gravatar for Shamim Sarhadi
3.3 years ago by
Shamim Sarhadi20 wrote:

I want to install multiClust package but I receive this error:

package ‘multiClust’ is not available (for R version 3.2.4)

I need this package for a big dataset clustering

I run this codes

source("https://bioconductor.org/biocLite.R")
biocLite("multiClust")
package installation • 720 views
ADD COMMENTlink modified 3.3 years ago • written 3.3 years ago by Shamim Sarhadi20
1

Please edit your question to indicate the command (and output) used to try to install the package. Please also add the output of the command sessionInfo(). ADD COMMENT to indicate that you have updated your post. Likely you are using the release version of R and Bioconductor, whereas multiClust is a new package and requires the 'devel' version of R and Bioconductor; the shield 'In Bioc' on the package landing page indicates that the package is only  available in devel.

ADD REPLYlink modified 3.3 years ago • written 3.3 years ago by Martin Morgan ♦♦ 23k

yes, I use the release version of R and Bioconductor !!!

ADD REPLYlink written 3.3 years ago by Shamim Sarhadi20
1

That's the problem, multiClust is only available in devel. So you can either wait till the next release on April 15, which will work with R-3.3, or you can install R-devel now from here.

 

ADD REPLYlink written 3.3 years ago by Dan Tenenbaum8.2k

Thank you  Dan Tenenbaum,

I think It's better to try with the R-devel or looking for another package !!!!

ADD REPLYlink written 3.3 years ago by Shamim Sarhadi20

sessionInfo()
R version 3.2.4 (2016-03-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] ClassifyR_1.4.15     BiocParallel_1.4.3   Biobase_2.30.0       BiocGenerics_0.16.1 
[5] BiocInstaller_1.20.1

loaded via a namespace (and not attached):
 [1] XVector_0.10.0        splines_3.2.4         zlibbioc_1.16.0       IRanges_2.4.8        
 [5] affyPLM_1.46.0        lattice_0.20-33       ROCR_1.0-7            caTools_1.17.1       
 [9] tools_3.2.4           grid_3.2.4            KernSmooth_2.23-15    gcrma_2.42.0         
[13] latticeExtra_0.6-28   affy_1.48.0           lambda.r_1.1.7        futile.logger_1.4.1  
[17] gtools_3.5.0          preprocessCore_1.32.0 affyio_1.40.0         RColorBrewer_1.1-2   
[21] bitops_1.0-6          S4Vectors_0.8.11      futile.options_1.0.0  gdata_2.17.0         
[25] gplots_2.17.0         Biostrings_2.38.4     locfit_1.5-9.1        stats4_3.2.4  

 

ADD REPLYlink written 3.3 years ago by Shamim Sarhadi20
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