Sample groups aren't recognized when trying to parse workspaces. I've tried loading wsp files from flowJo version X, as well as xml's saved from flowJo versions 8, 9, and X. This error occurs with any fcs generated from FACS, but does NOT occur for any samples acquired on the CyTOF.
FlowJo Workspace Version 2.0
File location: /Users/kmc/Documents/fcsCopiesForOpenCytoTrial
File name: HBRN_Tcell.xml
Workspace is open.
Groups in Workspace
1 All Samples 1
> gs <- parseWorkspace(ws, isNcdf = TRUE)
Choose which group of samples to import:
Enter an item from the menu, or 0 to exit
When I specify the sample group ahead of time I get this:
gs <- parseWorkspace(ws, name = 1, isNcdf = TRUE)
Error in .preprocessor(obj, ...) : Invalid sample group index.