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Showing :
opencyto
•
reset
0
votes
0
replies
62
views
openCyto 2.8.0: error in prior_flowclust
prior_flowclust
openCyto
8 weeks ago
martin.andres
• 0
0
votes
2
replies
268
views
openCyto Problem: Registered Gating Function Executes Twice when Called
openCyto
register_plugins
gs_add_gating_method
2.2 years ago
geoffreylewen
• 0
0
votes
1
reply
275
views
FlowCore openCyto: problem with summary(result)
flowCore
openCyto
Summary
Result
Filter
updated 2.3 years ago by
Jake Wagner
▴ 300 • written 2.4 years ago by
noviello
• 0
7
votes
3
replies
519
views
Adding quadGate.tmix to gating set with gs_pop_add
gs_pop_add
quadGate
openCyto
updated 2.3 years ago by
Jake Wagner
▴ 300 • written 2.3 years ago by
alavy
▴ 30
4
votes
5
replies
491
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace
flowCore
openCyto
flowFrame
F-measure
updated 2.3 years ago by
Jake Wagner
▴ 300 • written 2.3 years ago by
stefankolling+github
• 0
1
vote
5
replies
735
views
custom gatingMethod not functioning / registering as expected (openCyto) (minDensity)
openCyto
registerPlugin
gatingMethod
minDensity
3.0 years ago
k.teijgeler
• 0
5
votes
11
replies
954
views
polyFunctions gate in OpenCyto 1.20
opencyto
polyfunctions
polyfunctionsGate
updated 3.2 years ago by
Jiang, Mike
★ 1.3k • written 3.2 years ago by
k.teijgeler
• 0
0
votes
6
replies
826
views
How to select left hand side of mindensity2 gate
openCyto
mindensity
updated 3.5 years ago by
Jiang, Mike
★ 1.3k • written 3.5 years ago by
biomiha
▴ 20
0
votes
7
replies
750
views
RefGate populations switched in OpenCyto 1.20
RefGate
OpenCyto
updated 3.6 years ago by
Jiang, Mike
★ 1.3k • written 3.6 years ago by
k.teijgeler
• 0
3
votes
3
replies
1.1k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto
flowcore
flow cytometry
updated 3.9 years ago by
Jiang, Mike
★ 1.3k • written 4.8 years ago by
Andrew Box
▴ 10
0
votes
4
replies
2.0k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite
openCyto
package installation
updated 4.5 years ago by
Jiang, Mike
★ 1.3k • written 4.9 years ago by
Robert Baer
▴ 70
0
votes
6
replies
928
views
opencyto Error in .validity_check_alias
opencyto
updated 4.8 years ago by
Jiang, Mike
★ 1.3k • written 4.8 years ago by
biomiha
▴ 20
2
votes
5
replies
1.2k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace
opencyto
updated 5.0 years ago by
Jiang, Mike
★ 1.3k • written 5.0 years ago by
justinyi10
▴ 10
1
vote
5
replies
1.2k
views
Measure Median Fluorescence Intensity in openCyto
opencyto
updated 5.1 years ago by
Jiang, Mike
★ 1.3k • written 5.1 years ago by
justinyi10
▴ 10
0
votes
1
reply
562
views
Fail to load openCyto
opencyto
bioconductor
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
justinyi10
▴ 10
0
votes
1
reply
2.0k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto
fatal error
library
updated 5.1 years ago by
Jiang, Mike
★ 1.3k • written 5.1 years ago by
Maria
• 0
1
vote
1
reply
724
views
Add flowclust gate to gatingset
opencyto
flowclust
updated 5.2 years ago by
Jiang, Mike
★ 1.3k • written 5.2 years ago by
pavitrarc
▴ 20
2
votes
1
reply
701
views
openCyto displaying gating panels
opencyto
updated 5.6 years ago by
Jiang, Mike
★ 1.3k • written 5.6 years ago by
Rivka
• 0
2
votes
1
reply
647
views
openCyto working Example: expects {flowWorkspace} but example
opencyto
bioconductor
opencyto gating
updated 5.6 years ago by
Jiang, Mike
★ 1.3k • written 5.6 years ago by
Rivka
• 0
2
votes
4
replies
817
views
Parsing flowWorkspace data
opencyto
R
flowworkspace
bioconductor
updated 5.7 years ago by
Jiang, Mike
★ 1.3k • written 5.7 years ago by
Rivka
• 0
1
vote
4
replies
970
views
openCyto trouble importing xml file
opencyto
bioconductor
R
5.7 years ago
Rivka
• 0
0
votes
1
reply
825
views
using flowIncubator package's function
opencyto
flow cytometry
R
package installation
updated 6.1 years ago by
Jiang, Mike
★ 1.3k • written 6.1 years ago by
anara92
• 0
1
vote
5
replies
1.2k
views
openCyto - flowclust.2d throws errors
opencyto
flow cytometry
updated 6.3 years ago by
bmuchmore
• 0 • written 6.3 years ago by
Ulrik Stervbo
▴ 30
0
votes
1
reply
1.5k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating
opencyto
flowcore
flowworkspace
updated 6.3 years ago by
Jiang, Mike
★ 1.3k • written 6.3 years ago by
anara92
• 0
1
vote
3
replies
814
views
OpenCyto - getting gate coordinates
opencyto
6.3 years ago
Ulrik Stervbo
▴ 30
2
votes
1
reply
1.2k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace
opencyto
updated 6.4 years ago by
lovetatting
▴ 10 • written 6.4 years ago by
wir.traumen
▴ 10
0
votes
1
reply
1.3k
views
FlowWorkspace and norm2Filter
flowcytometry
opencyto
flowworkspace
flowcore
6.4 years ago
Jiang, Mike
★ 1.3k
1
vote
2
replies
780
views
openCyto - samples with low cell counts
flowcytometry
opencyto
6.6 years ago
Jiang, Mike
★ 1.3k
0
votes
3
replies
1.5k
views
openCyto: compilation failure during installation
opencyto
rhdf5
compilation error
6.6 years ago
gmirkin
• 0
1
vote
9
replies
2.2k
views
Problem with ggcyto/flowWorkspace from GitHub
software error
flowworkspace
opencyto
6.6 years ago
anders.tondell
▴ 30
4
votes
8
replies
2.0k
views
openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust
opencyto
opencyto gating
updated 6.7 years ago by
Greg Finak
▴ 240 • written 6.8 years ago by
Viktor Thiel
• 0
0
votes
5
replies
1.4k
views
openCyto fails to load
opencyto
bioclite
updated 6.8 years ago by
yang.chen
• 0 • written 6.8 years ago by
pavitrarc
▴ 20
0
votes
4
replies
1.1k
views
Issues parsing workspace in openCyto
opencyto
7.1 years ago
JK
▴ 10
0
votes
0
replies
978
views
openCyto transitional gate
flow cytometry
opencyto
7.3 years ago
Jiang, Mike
★ 1.3k
0
votes
0
replies
946
views
Re: FlowStats help
flowclust
opencyto
flowcytometry
7.4 years ago
Jiang, Mike
★ 1.3k
5
votes
4
replies
2.4k
views
openCyto: Using combination gates (boolean gates)
opencyto
opencyto gating
FlowJo
updated 7.6 years ago by
Greg Finak
▴ 150 • written 7.6 years ago by
juancamilos
▴ 10
4
votes
1
reply
1.2k
views
News:
New Flow Cytometry Data Analysis Framework
flowcore
flowcytometry
opencyto
new
News
7.9 years ago
Greg Finak
▴ 150
1
vote
0
replies
1.3k
views
Issue with flowDensity on OpenCyto
flowClust
openCyto
flowDensity
flowClust
openCyto
flowDensity
8.0 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.1k
views
OpenCyto
Cancer
eisa
openCyto
Cancer
eisa
openCyto
8.2 years ago • updated 8.1 years ago
Jiang, Mike
★ 1.3k
0
votes
0
replies
649
views
Bioconductor Digest, Vol 134, Issue 10
openCyto
flowDensity
openCyto
flowDensity
8.3 years ago
Jiang, Mike
★ 1.3k
40 results • Page
1 of 1
Recent ...
Replies
Comment: Design and contrast matrices for analyzing the effect of two factors of interest
by
Gordon Smyth
46k
I understand that your mock dataset has expression data for just one protein instead of 8000, but is the phenoData complete? Does your real…
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60k
Or maybe it is a quick fix! Nicely done Marcel!
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by
Tiago C. Silva
▴ 220
It is working with the github version. Could you update please? BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data") …
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by
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570
You can try the Genomic Data Commons Data Portal at [https://portal.gdc.cancer.gov/][1] or the `GenomicDataCommons` R/Bioconductor packag…
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by
Marcel Ramos
570
I've updated the package to handle these requests on both Bioc devel and release 3.15. Let me know if you have any issues. Best, M…
Votes
A: Importance of Order in Design Formula
remove microarray batch effects using Limma
On empirical Bayes of edgeR
Answer: CQN to DESeq2
Comment: package 'BiocInstaller' is not available (for R version 3.4.4)
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Marcel Ramos
570
Scholar
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Gordon Smyth
46k
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sunnykevin97
• 0
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Alejandro Reyes
★ 1.8k
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Leonardo Collado Torres
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