Showing : opencyto • reset
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Deprecated Gates- tailgate
openCyto
16 months ago ztflaten • 0
0
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0
replies
667
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OpenCyto polyFunctions
openCyto
2.6 years ago Albert • 0
0
votes
0
replies
1.0k
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
3.3 years ago Dennis.hinkel • 0
1
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1
reply
1.4k
views
creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 3.3 years ago by ★ 4.0k • written 3.3 years ago by • 0
0
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0
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889
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gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
3.3 years ago Noël • 0
0
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0
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803
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openCyto 2.8.0: error in prior_flowclust
prior_flowclust openCyto
3.7 years ago martin.andres • 0
0
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2
replies
1.1k
views
openCyto Problem: Registered Gating Function Executes Twice when Called
openCyto register_plugins gs_add_gating_method
5.7 years ago geoffreylewen • 0
0
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1
reply
1.3k
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 5.8 years ago by ▴ 310 • written 5.9 years ago by • 0
7
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3
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2.3k
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Adding quadGate.tmix to gating set with gs_pop_add
gs_pop_add quadGate openCyto
updated 5.8 years ago by ▴ 310 • written 5.8 years ago by ▴ 30
4
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5
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2.0k
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Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 5.9 years ago by ▴ 310 • written 5.9 years ago by • 0
1
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5
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2.3k
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custom gatingMethod not functioning / registering as expected (openCyto) (minDensity)
openCyto registerPlugin gatingMethod minDensity
6.5 years ago k.teijgeler • 0
5
votes
11
replies
2.9k
views
polyFunctions gate in OpenCyto 1.20
opencyto polyfunctions polyfunctionsGate
updated 6.7 years ago by ★ 1.3k • written 6.7 years ago by • 0
0
votes
6
replies
2.4k
views
How to select left hand side of mindensity2 gate
openCyto mindensity
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by ▴ 20
0
votes
7
replies
2.3k
views
RefGate populations switched in OpenCyto 1.20
RefGate OpenCyto
updated 7.1 years ago by ★ 1.3k • written 7.2 years ago by • 0
3
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3
replies
2.5k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 7.4 years ago by ★ 1.3k • written 8.3 years ago by ▴ 10
0
votes
4
replies
3.4k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 8.0 years ago by ★ 1.3k • written 8.4 years ago by ▴ 70
0
votes
6
replies
2.5k
views
opencyto Error in .validity_check_alias
opencyto
updated 8.4 years ago by ★ 1.3k • written 8.4 years ago by ▴ 20
2
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5
replies
2.6k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace opencyto
updated 8.5 years ago by ★ 1.3k • written 8.5 years ago by ▴ 10
1
vote
5
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2.7k
views
Measure Median Fluorescence Intensity in openCyto
opencyto
updated 8.6 years ago by ★ 1.3k • written 8.6 years ago by ▴ 10
0
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1
reply
1.3k
views
Fail to load openCyto
opencyto bioconductor
updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 10
0
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1
reply
3.0k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto fatal error library
updated 8.6 years ago by ★ 1.3k • written 8.6 years ago by • 0
1
vote
1
reply
1.8k
views
Add flowclust gate to gatingset
opencyto flowclust
updated 8.7 years ago by ★ 1.3k • written 8.7 years ago by ▴ 20
2
votes
1
reply
1.5k
views
openCyto displaying gating panels
opencyto
updated 9.1 years ago by ★ 1.3k • written 9.1 years ago by • 0
2
votes
1
reply
1.5k
views
openCyto working Example: expects {flowWorkspace} but example
opencyto bioconductor opencyto gating
updated 9.1 years ago by ★ 1.3k • written 9.1 years ago by • 0
2
votes
4
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2.0k
views
Parsing flowWorkspace data
opencyto R flowworkspace bioconductor
updated 9.2 years ago by ★ 1.3k • written 9.2 years ago by • 0
1
vote
4
replies
2.1k
views
openCyto trouble importing xml file
opencyto bioconductor R
9.2 years ago Rivka • 0
0
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1
reply
1.7k
views
using flowIncubator package's function
opencyto flow cytometry R package installation
updated 9.6 years ago by ★ 1.3k • written 9.6 years ago by • 0
1
vote
5
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2.4k
views
openCyto - flowclust.2d throws errors
opencyto flow cytometry
updated 9.8 years ago by • 0 • written 9.8 years ago by ▴ 30
0
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1
reply
3.1k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating opencyto flowcore flowworkspace
updated 9.8 years ago by ★ 1.3k • written 9.8 years ago by • 0
1
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3
replies
2.1k
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OpenCyto - getting gate coordinates
opencyto
9.8 years ago Ulrik Stervbo ▴ 30
2
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1
reply
2.4k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace opencyto
updated 9.9 years ago by ▴ 10 • written 9.9 years ago by ▴ 10
0
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1
reply
2.4k
views
FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
9.9 years ago Jiang, Mike ★ 1.3k
1
vote
2
replies
1.7k
views
openCyto - samples with low cell counts
flowcytometry opencyto
10.1 years ago Jiang, Mike ★ 1.3k
0
votes
3
replies
2.6k
views
openCyto: compilation failure during installation
opencyto rhdf5 compilation error
10.1 years ago gmirkin • 0
1
vote
9
replies
4.5k
views
Problem with ggcyto/flowWorkspace from GitHub
software error flowworkspace opencyto
10.1 years ago anders.tondell ▴ 30
4
votes
8
replies
3.8k
views
openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust opencyto opencyto gating
updated 10.2 years ago by ▴ 240 • written 10.3 years ago by • 0
0
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5
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2.6k
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openCyto fails to load
opencyto bioclite
updated 10.3 years ago by • 0 • written 10.3 years ago by ▴ 20
0
votes
4
replies
2.1k
views
Issues parsing workspace in openCyto
opencyto
10.6 years ago JK ▴ 10
0
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0
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1.7k
views
openCyto transitional gate
flow cytometry opencyto
10.9 years ago Jiang, Mike ★ 1.3k
0
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0
replies
1.7k
views
Re: FlowStats help
flowclust opencyto flowcytometry
10.9 years ago Jiang, Mike ★ 1.3k
5
votes
4
replies
3.9k
views
openCyto: Using combination gates (boolean gates)
opencyto opencyto gating FlowJo
updated 11.1 years ago by ▴ 150 • written 11.1 years ago by ▴ 10
4
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1
reply
2.2k
views
News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
11.4 years ago Greg Finak ▴ 150
1
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0
replies
2.1k
views
Issue with flowDensity on OpenCyto
flowClust openCyto flowDensity flowClust openCyto flowDensity
11.5 years ago Jiang, Mike ★ 1.3k
0
votes
1
reply
1.8k
views
OpenCyto
Cancer eisa openCyto Cancer eisa openCyto
11.7 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
1.3k
views
Bioconductor Digest, Vol 134, Issue 10
openCyto flowDensity openCyto flowDensity
11.9 years ago Jiang, Mike ★ 1.3k
45 results • Page 1 of 1
Recent ...
Replies
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0
Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…
Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0
Hello, I was also wondering about the same issue. Did you figure it out?
Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0
FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…
Votes
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
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