problem loading gwascat and ggbio
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@jameshunterbr-11003
Last seen 6.1 years ago

The gwscat program won't load because it depends on ggbio, which has a loading problem:

Error : (converted from warning) replacing previous import 
'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'

Error: package or namespace load failed for 'ggbio'

 

I am working with a Mac (El Capitan) under RStudio (but same problem exists in R's own console), R v. 3.3.1, Bioconductor 3.3 and freshly downloaded versions of gwascat and ggbio.

Is there a workaround? 

Thanks, Jim Hunter

gwascat ggbio Mac • 1.3k views
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@jameshunterbr-11003
Last seen 6.1 years ago

I'll answer my own question, thanks to the ggbio maintainer. Watch out for any option in your .Rprofile (if you have it) or interactive that sets warning = 2. This will translate warnings into errors and stop you cold.

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