Question: problem loading gwascat and ggbio
0
gravatar for jameshunterbr
3.3 years ago by
jameshunterbr0 wrote:

The gwscat program won't load because it depends on ggbio, which has a loading problem:

Error : (converted from warning) replacing previous import 
'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'

Error: package or namespace load failed for 'ggbio'

 

I am working with a Mac (El Capitan) under RStudio (but same problem exists in R's own console), R v. 3.3.1, Bioconductor 3.3 and freshly downloaded versions of gwascat and ggbio.

Is there a workaround? 

Thanks, Jim Hunter

ggbio mac gwascat • 549 views
ADD COMMENTlink modified 3.3 years ago • written 3.3 years ago by jameshunterbr0
Answer: problem loading gwascat and ggbio
0
gravatar for jameshunterbr
3.3 years ago by
jameshunterbr0 wrote:

I'll answer my own question, thanks to the ggbio maintainer. Watch out for any option in your .Rprofile (if you have it) or interactive that sets warning = 2. This will translate warnings into errors and stop you cold.

ADD COMMENTlink written 3.3 years ago by jameshunterbr0
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