Bioconductor Gwascat

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gwascat

5.1 years ago anailis • 0

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gwascat r

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GWASTools gwascat

updated 5.3 years ago by Mike Smith ★ 6.6k • written 5.3 years ago by wmov98 ▴ 10

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gwascat

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gwascat

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gwascat ggbio Mac

9.7 years ago jameshunterbr • 0

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gwascat

9.9 years ago enricoferrero ▴ 680

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Comment: GSEA error by Adithi • 0

Thank you so much. That makes perfect sense to me. I will work on this.

Comment: tximeta cannot open annotation gtf? by Michael Love 43k

Yes, so this is the same type of error you would get if you tried to assemble a *SummarizedExperiment* manually with tximport + GTF process…

Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

Answer: GSEA error by James W. MacDonald 68k

At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

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Answer: GSEA error

Answer: OrgDb for maize

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

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