Showing : ggbio • reset
1
vote
5
replies
452
views
how can I add a label for granges using the geom_rect ?
ggbio
6 months ago 潘晓光 • 0
0
votes
7
replies
788
views
Uniform window size for different genes
ggbio
16 months ago rbenel ▴ 30
0
votes
0
replies
363
views
Remove space on x-axis
ggbio
20 months ago sophieagger • 0
0
votes
2
replies
651
views
Error in GenomeInfoDb:::makeNewSeqnames
GenomeInfoDb ggbio
2.4 years ago Konstantinos Yeles ▴ 80
18
votes
4
replies
1.1k
views
`ggbio` package can't be loaded
ggbio
2.4 years ago Batool ▴ 370
0
votes
2
replies
909
views
ggbio autoplot() error "object of type 'symbol' is not subsettable"
ggbio
2.5 years ago Andrew • 0
0
votes
2
replies
502
views
Does biovizBase contain a genesymbol data set for other model organisms?
biovizBase ggbio
updated 3.2 years ago by 63k • written 3.2 years ago by ▴ 20
0
votes
2
replies
524
views
ggbio tracks not aligned when legend present in one track
ggbio
updated 3.5 years ago by 11k • written 3.5 years ago by ▴ 740
0
votes
6
replies
2.0k
views
Error while attempting to forge BSgenome data package
bsgenome ggbio
updated 3.6 years ago by • 0 • written 8.6 years ago by • 0
1
vote
3
replies
1.1k
views
ggbio - change transcript label sizes
ggbio annotation
updated 13 months ago by ▴ 50 • written 3.8 years ago by 3.8k
12
votes
7
replies
3.7k
views
Plot ggplot2 and ggbio Images Together
ggplot2 ggbio cowplot
updated 3.8 years ago by ★ 1.5k • written 8.0 years ago by ▴ 360
0
votes
0
replies
638
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio ideogram autoplot
4.4 years ago gpwhiz ▴ 10
0
votes
0
replies
638
views
Recommendation for visualizing ChIP-qPCR data?
R chip-seq histone chip-seq ggbio
4.5 years ago Ramiro Magno ▴ 100
1
vote
2
replies
1.2k
views
ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
ggbio ggplot2
4.5 years ago t.fadason ▴ 10
0
votes
9
replies
2.1k
views
Featurecounts issue for counting exons: Not matching total counts mapped for specific gene
featurecounts Rsubread ggbio
updated 4.5 years ago by ★ 3.5k • written 4.5 years ago by ▴ 40
0
votes
0
replies
668
views
xlim not working with ggbio
ggbio
4.6 years ago marisa.e.miller • 0
1
vote
1
reply
755
views
ggbio labels with ggrepeal on circos plot
ggbio r graphics
4.7 years ago franceschini.gianmarco • 0
2
votes
2
replies
695
views
aes label in ggbio_1.26.1 with ggplot2_3.0.0
ggbio ggplot2
4.7 years ago Lescai, Francesco ▴ 380
0
votes
2
replies
660
views
visualization of chromatin interaction networks
gviz ggbio karyotypeR
updated 4.9 years ago by ★ 28k • written 4.9 years ago by ▴ 660
0
votes
0
replies
1.5k
views
ggbio Error: Don't know how to add o to a plot
software error ggbio ggplot2
4.9 years ago zhe ▴ 20
0
votes
0
replies
582
views
Circular plot of transcript models with ggbio.
ggbio
5.6 years ago Charles Plessy ▴ 170
0
votes
2
replies
1.2k
views
Cytoband information for rice
rice cytoband circlize ggbio ideogram
5.9 years ago Didi ▴ 10
2
votes
5
replies
2.7k
views
Error in GenomeInfoDb:::getDanglingSeqlevels
ggbio
5.9 years ago Bogdan ▴ 660
0
votes
1
reply
3.0k
views
an error in ggbio: "Breaks and labels are different lengths"
ggbio ggplot2
6.1 years ago Bogdan ▴ 660
0
votes
1
reply
1.2k
views
In ggbio, plot transcripts from a TxDb with gene labels
ggbio
updated 6.2 years ago by 11k • written 6.2 years ago by • 0
1
vote
4
replies
2.0k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc ucsctrack ggbio Gviz hg19
updated 6.3 years ago by ▴ 10 • written 6.3 years ago by ▴ 10
1
vote
3
replies
2.3k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 6.4 years ago by 11k • written 6.4 years ago by ▴ 10
2
votes
4
replies
1.0k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 6.4 years ago by 11k • written 6.4 years ago by ▴ 10
0
votes
2
replies
1.1k
views
tracks () function from ggbio does not allow italic expression in the title
ggbio ggplot2 title typography
6.7 years ago • updated 6.4 years ago oswaldo.lorenzo ▴ 10
0
votes
3
replies
1.2k
views
ggbio: integrate different plots
ggbio
updated 6.5 years ago by 11k • written 6.5 years ago by • 0
0
votes
1
reply
1.0k
views
ggbio tracks issue
ggbio tracks
6.5 years ago longoka • 0
7
votes
9
replies
2.5k
views
Install ggbio development version
ggbio development package installation
updated 6.6 years ago by 25k • written 6.6 years ago by ▴ 10
1
vote
1
reply
950
views
Add main title to ggbio's karyogram
ggbio karyogram granges
updated 6.6 years ago by 11k • written 6.6 years ago by ▴ 80
0
votes
1
reply
1.7k
views
Missing levels in legend using autoplot () + scale_color_manual () functions
ggbio ggplot2 legend bioconductor karyiogram
6.7 years ago oswaldo.lorenzo ▴ 10
1
vote
1
reply
1.3k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
6.7 years ago oswaldo.lorenzo ▴ 10
0
votes
1
reply
2.0k
views
Ideogram not alligned with ggbio and tracks()
ggbio ggplot2
updated 6.7 years ago by ▴ 10 • written 7.1 years ago by ▴ 10
0
votes
2
replies
921
views
ggbio: untransformed coordinate when using `tracks` function with IRanges or numeric value as `xlim`
ggbio tracks
updated 6.7 years ago by ▴ 10 • written 6.8 years ago by ▴ 20
2
votes
3
replies
1.4k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
6.7 years ago oswaldo.lorenzo ▴ 10
0
votes
0
replies
752
views
Highlighting Significantly Associated Sites on Manhattan Plot using ggbio
ggbio manhattan plot plotGrandLinear
6.8 years ago graggsd • 0
0
votes
1
reply
949
views
problem loading gwascat and ggbio
gwascat ggbio Mac
6.9 years ago jameshunterbr • 0
0
votes
0
replies
671
views
ggbio: axis in karyogram line graph overlay
ggbio
7.0 years ago map2085 ▴ 40
0
votes
1
reply
868
views
ggbio axis in karyogram
ggbio
updated 8 months ago by • 0 • written 7.0 years ago by ▴ 40
0
votes
0
replies
700
views
Cannot replicate VCF plot from help page
ggbio
7.0 years ago kevin.rue ▴ 320
0
votes
0
replies
778
views
ggbio plotIdeogram(..., zoom.region) broken ?
ggbio biovizBase
7.0 years ago kevin.rue ▴ 320
0
votes
1
reply
1.1k
views
ggbio OrganismDb autoplot - reduce vs identity
ggbio autoplot
updated 7.0 years ago by 63k • written 7.0 years ago by ▴ 380
0
votes
2
replies
1.1k
views
Cannot replicate circle plot vignette output in ggbio devel
software error ggbio circle plot
updated 7.2 years ago by 11k • written 7.2 years ago by ▴ 90
3
votes
2
replies
1.5k
views
Cannot use color/ fill arguments outside of aes() in ggbio karyogram layout
ggbio
7.2 years ago Mario Saare ▴ 20
0
votes
2
replies
924
views
puzzling ggbio behaviour when plotting a detail of a track
ggbio
updated 7.3 years ago by 63k • written 7.3 years ago by ▴ 160
2
votes
3
replies
1.9k
views
No color support in ggbio for autoplot
ggbio autoplot color vignette
updated 7.3 years ago by ▴ 10 • written 7.3 years ago by • 0
1
vote
4
replies
2.0k
views
Cannot get ggbio autoplot to run successfully on R 3.2 (3.2.2 or 3.2.3)
ggbio ggplot2 autoplot bioconductor gene models
updated 7.4 years ago by • 0 • written 7.4 years ago by ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10
Sure, noted.
Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10
@gordonsmyth Yes, I realized while re-running through the WGCNA workflow and forget to account for the paired experiment. For general gene …
Comment: Question on constructing design matrix and defining contrasts for analysis by Gordon Smyth 47k
PS. Just as aside, using `dput` to show a data.frame is unnecessary overkill. Just typing `targetsframe` at the prompt would do the job.
Comment: Question on constructing design matrix and defining contrasts for analysis by Gordon Smyth 47k
> Basically, I want to create a design matrix and binarize by 0 and 1 to be used in WGCNA analysis to compare module between/within groups …
Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl by ansleyharralson • 0
Any estimate on when DelayedArray 0.26.3 will be released for macOS Binary (arm64)? Latest is still 0.26.02 best I can tell.
Votes
WGCNA coupled with differential expression analysis: question about baseline module detection
WGCNA with paired samples
Comment: Question on constructing design matrix and defining contrasts for analysis
Comment: Question on constructing design matrix and defining contrasts for analysis
Answer: Question on constructing design matrix and defining contrasts for analysis
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