Showing : ggbio • reset
1
vote
5
replies
940
views
how can I add a label for granges using the geom_rect ?
ggbio
17 months ago 潘晓光 • 0
0
votes
7
replies
1.2k
views
Uniform window size for different genes
ggbio
2.3 years ago rbenel ▴ 40
0
votes
0
replies
618
views
Remove space on x-axis
ggbio
2.6 years ago sophieagger • 0
0
votes
2
replies
1.0k
views
Error in GenomeInfoDb:::makeNewSeqnames
GenomeInfoDb ggbio
3.3 years ago Konstantinos Yeles ▴ 80
18
votes
4
replies
1.6k
views
`ggbio` package can't be loaded
ggbio
3.3 years ago Batool ▴ 370
0
votes
2
replies
1.2k
views
ggbio autoplot() error "object of type 'symbol' is not subsettable"
ggbio
3.4 years ago Andrew • 0
0
votes
2
replies
744
views
Does biovizBase contain a genesymbol data set for other model organisms?
biovizBase ggbio
updated 4.1 years ago by 65k • written 4.1 years ago by ▴ 20
0
votes
2
replies
822
views
ggbio tracks not aligned when legend present in one track
ggbio
updated 4.4 years ago by ★ 11k • written 4.4 years ago by ▴ 740
0
votes
6
replies
2.4k
views
Error while attempting to forge BSgenome data package
bsgenome ggbio
updated 4.5 years ago by • 0 • written 9.5 years ago by • 0
1
vote
3
replies
1.6k
views
ggbio - change transcript label sizes
ggbio annotation
updated 2.0 years ago by ▴ 50 • written 4.7 years ago by ★ 3.9k
12
votes
7
replies
4.4k
views
Plot ggplot2 and ggbio Images Together
ggplot2 ggbio cowplot
updated 4.7 years ago by ★ 1.5k • written 8.9 years ago by ▴ 370
0
votes
0
replies
859
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio ideogram autoplot
5.3 years ago gpwhiz ▴ 10
0
votes
0
replies
873
views
Recommendation for visualizing ChIP-qPCR data?
R chip-seq histone chip-seq ggbio
5.4 years ago Ramiro Magno ▴ 100
1
vote
2
replies
1.6k
views
ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
ggbio ggplot2
5.4 years ago t.fadason ▴ 10
0
votes
9
replies
2.9k
views
Featurecounts issue for counting exons: Not matching total counts mapped for specific gene
featurecounts Rsubread ggbio
updated 5.4 years ago by ★ 3.6k • written 5.4 years ago by ▴ 40
0
votes
0
replies
907
views
xlim not working with ggbio
ggbio
5.5 years ago marisa.e.miller • 0
1
vote
1
reply
1.0k
views
ggbio labels with ggrepeal on circos plot
ggbio r graphics
5.6 years ago franceschini.gianmarco • 0
2
votes
2
replies
958
views
aes label in ggbio_1.26.1 with ggplot2_3.0.0
ggbio ggplot2
5.6 years ago Lescai, Francesco ▴ 380
0
votes
2
replies
901
views
visualization of chromatin interaction networks
gviz ggbio karyotypeR
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 670
0
votes
0
replies
1.8k
views
ggbio Error: Don't know how to add o to a plot
software error ggbio ggplot2
5.8 years ago zhe ▴ 20
0
votes
0
replies
775
views
Circular plot of transcript models with ggbio.
ggbio
6.5 years ago Charles Plessy ▴ 180
0
votes
2
replies
1.6k
views
Cytoband information for rice
rice cytoband circlize ggbio ideogram
6.8 years ago Didi ▴ 10
2
votes
5
replies
3.3k
views
Error in GenomeInfoDb:::getDanglingSeqlevels
ggbio
6.8 years ago Bogdan ▴ 670
0
votes
1
reply
3.3k
views
an error in ggbio: "Breaks and labels are different lengths"
ggbio ggplot2
7.0 years ago Bogdan ▴ 670
0
votes
1
reply
1.4k
views
In ggbio, plot transcripts from a TxDb with gene labels
ggbio
updated 7.2 years ago by ★ 11k • written 7.2 years ago by • 0
1
vote
4
replies
2.6k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc ucsctrack ggbio Gviz hg19
updated 7.2 years ago by ▴ 10 • written 7.2 years ago by ▴ 10
1
vote
3
replies
2.8k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 10
2
votes
4
replies
1.3k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 10
0
votes
2
replies
1.4k
views
tracks () function from ggbio does not allow italic expression in the title
ggbio ggplot2 title typography
7.6 years ago • updated 7.3 years ago oswaldo.lorenzo ▴ 10
0
votes
3
replies
1.5k
views
ggbio: integrate different plots
ggbio
updated 7.4 years ago by ★ 11k • written 7.4 years ago by • 0
0
votes
1
reply
1.3k
views
ggbio tracks issue
ggbio tracks
7.4 years ago longoka • 0
7
votes
9
replies
2.9k
views
Install ggbio development version
ggbio development package installation
updated 7.5 years ago by 25k • written 7.5 years ago by ▴ 10
1
vote
1
reply
1.2k
views
Add main title to ggbio's karyogram
ggbio karyogram granges
updated 7.5 years ago by ★ 11k • written 7.5 years ago by ▴ 80
0
votes
1
reply
2.0k
views
Missing levels in legend using autoplot () + scale_color_manual () functions
ggbio ggplot2 legend bioconductor karyiogram
7.6 years ago oswaldo.lorenzo ▴ 10
1
vote
1
reply
1.6k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
7.6 years ago oswaldo.lorenzo ▴ 10
0
votes
1
reply
2.4k
views
Ideogram not alligned with ggbio and tracks()
ggbio ggplot2
updated 7.6 years ago by ▴ 10 • written 8.0 years ago by ▴ 10
0
votes
2
replies
1.1k
views
ggbio: untransformed coordinate when using `tracks` function with IRanges or numeric value as `xlim`
ggbio tracks
updated 7.6 years ago by ▴ 10 • written 7.7 years ago by ▴ 20
2
votes
3
replies
1.7k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
7.6 years ago oswaldo.lorenzo ▴ 10
0
votes
0
replies
1.0k
views
Highlighting Significantly Associated Sites on Manhattan Plot using ggbio
ggbio manhattan plot plotGrandLinear
7.7 years ago graggsd • 0
0
votes
1
reply
1.2k
views
problem loading gwascat and ggbio
gwascat ggbio Mac
7.8 years ago jameshunterbr • 0
0
votes
0
replies
865
views
ggbio: axis in karyogram line graph overlay
ggbio
7.9 years ago map2085 ▴ 40
0
votes
1
reply
1.1k
views
ggbio axis in karyogram
ggbio
updated 19 months ago by • 0 • written 7.9 years ago by ▴ 40
0
votes
0
replies
924
views
Cannot replicate VCF plot from help page
ggbio
7.9 years ago kevin.rue ▴ 350
0
votes
0
replies
995
views
ggbio plotIdeogram(..., zoom.region) broken ?
ggbio biovizBase
7.9 years ago kevin.rue ▴ 350
0
votes
1
reply
1.3k
views
ggbio OrganismDb autoplot - reduce vs identity
ggbio autoplot
updated 7.9 years ago by 65k • written 7.9 years ago by ▴ 380
0
votes
2
replies
1.4k
views
Cannot replicate circle plot vignette output in ggbio devel
software error ggbio circle plot
updated 8.1 years ago by ★ 11k • written 8.1 years ago by ▴ 90
3
votes
2
replies
1.7k
views
Cannot use color/ fill arguments outside of aes() in ggbio karyogram layout
ggbio
8.1 years ago Mario Saare ▴ 20
0
votes
2
replies
1.2k
views
puzzling ggbio behaviour when plotting a detail of a track
ggbio
updated 8.2 years ago by 65k • written 8.2 years ago by ▴ 160
2
votes
3
replies
2.3k
views
No color support in ggbio for autoplot
ggbio autoplot color vignette
updated 8.2 years ago by ▴ 10 • written 8.3 years ago by • 0
1
vote
4
replies
2.4k
views
Cannot get ggbio autoplot to run successfully on R 3.2 (3.2.2 or 3.2.3)
ggbio ggplot2 autoplot bioconductor gene models
updated 8.3 years ago by ▴ 10 • written 8.3 years ago by ▴ 10
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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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