Question: Error when installing ReportingTools
0
gravatar for Asma rabe
2.9 years ago by
Asma rabe290
Japan
Asma rabe290 wrote:

Hi,

I got this error while installing ReportingTools:

Error in download.file(url, destfile, method, mode = "wb", ...) :
  cannot download all files
In addition: Warning message:
In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://bioconductor.org/packages/3.4/bioc/src/contrib/GSEABase_1.35.0.tar.gz': status was '404 Not Found'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package 'GSEABase' failed
trying URL 'https://bioconductor.org/packages/3.4/bioc/src/contrib/DESeq2_1.13.8.tar.gz'
Content type 'application/x-gzip' length 1418916 bytes (1.4 MB)
==================================================
downloaded 1.4 MB

 

==========

Any help is appreciated

 

reportingtools • 370 views
ADD COMMENTlink modified 2.9 years ago • written 2.9 years ago by Asma rabe290
Answer: Error when installing ReportingTools
0
gravatar for Martin Morgan
2.9 years ago by
Martin Morgan ♦♦ 23k
United States
Martin Morgan ♦♦ 23k wrote:

I don't really understand why this error occurs, but the version of GSEABase available for Bioc 3.4 is 1.35.2, as seen from the package landing page for version 3.4. Does the error persist if you install packages from a new R session? Can you please edit your session to include the output of sessionInfo()?

ADD COMMENTlink written 2.9 years ago by Martin Morgan ♦♦ 23k
Answer: Error when installing ReportingTools
0
gravatar for Asma rabe
2.9 years ago by
Asma rabe290
Japan
Asma rabe290 wrote:

Hi Martin,

Thank you very much.

The error was due to that installing RcppArmadillo package requires gcc version > gcc4.6.

It works when i installed gcc4.8.

Again. Thank you!

ADD COMMENTlink written 2.9 years ago by Asma rabe290

The version of gcc would not influence the ability of R to download a file, so that is not the problem. Glad that this is working for you now.

ADD REPLYlink written 2.9 years ago by Martin Morgan ♦♦ 23k
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