Error when installing ReportingTools
2
0
Entering edit mode
Asma rabe ▴ 290
@asma-rabe-4697
Last seen 3.7 years ago
Japan

Hi,

I got this error while installing ReportingTools:

Error in download.file(url, destfile, method, mode = "wb", ...) :
  cannot download all files
In addition: Warning message:
In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://bioconductor.org/packages/3.4/bioc/src/contrib/GSEABase_1.35.0.tar.gz': status was '404 Not Found'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package 'GSEABase' failed
trying URL 'https://bioconductor.org/packages/3.4/bioc/src/contrib/DESeq2_1.13.8.tar.gz'
Content type 'application/x-gzip' length 1418916 bytes (1.4 MB)
==================================================
downloaded 1.4 MB

 

==========

Any help is appreciated

 

reportingtools • 552 views
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@martin-morgan-1513
Last seen 4 hours ago
United States

I don't really understand why this error occurs, but the version of GSEABase available for Bioc 3.4 is 1.35.2, as seen from the package landing page for version 3.4. Does the error persist if you install packages from a new R session? Can you please edit your session to include the output of sessionInfo()?

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Entering edit mode
Asma rabe ▴ 290
@asma-rabe-4697
Last seen 3.7 years ago
Japan

Hi Martin,

Thank you very much.

The error was due to that installing RcppArmadillo package requires gcc version > gcc4.6.

It works when i installed gcc4.8.

Again. Thank you!

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Entering edit mode

The version of gcc would not influence the ability of R to download a file, so that is not the problem. Glad that this is working for you now.

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