Question: GO evidence code IMR
0
gravatar for Peter Langfelder
3.3 years ago by
United States
Peter Langfelder2.3k wrote:

Just upgraded to the current bioconductor (stable) release with org.Mm.eg.db_3.3.0 (and GO.db_3.3.0). It appears that the evidence codes listed in org.Mm.egGO2EG include the code IMR which is not listed at the web site the help for org.Mm.egGO2EG links to. Is this a new code not listed on the GO web site, or is it some kind of a bug/typo? Also, the web link

http://www.geneontology.org/GO.evidence.shtml
given in the help file seems obsolete, it gets redirected to

http://geneontology.org/page/guide-go-evidence-codes

Perhaps that should be changed as well.

Thanks,

Peter

go org.mm.eg.db • 521 views
ADD COMMENTlink modified 3.3 years ago • written 3.3 years ago by Peter Langfelder2.3k
Answer: GO evidence code IMR
1
gravatar for James W. MacDonald
3.3 years ago by
United States
James W. MacDonald51k wrote:

It's not a typo on our side. If you look at AmiGO, and scroll down to negative regulation of macroautophagy, it's listed as IMR. And yes, there is some amount of 'link chasing' needed, as online data do tend to get moved. Unfortunately, during the build process for the annotation packages, which is pretty involved, chasing errant help links tends to get overlooked.

ADD COMMENTlink written 3.3 years ago by James W. MacDonald51k
Answer: GO evidence code IMR
0
gravatar for Peter Langfelder
3.3 years ago by
United States
Peter Langfelder2.3k wrote:

Thanks for the information. For the benefit of people who may find this thread interesting, it turns out that IMR is a synonym for IKR:

ftp://ftp.geneontology.org/pub/go/www/GO.evidence.shtml#ikr

I didn't mean to criticize the maintainers for the link (all the more since the link still works), just suggesting a correction for when the maintainers have a spare minute or two.

ADD COMMENTlink written 3.3 years ago by Peter Langfelder2.3k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 416 users visited in the last hour