Showing : GO • reset
1
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3
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195
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GOstats - are significantly enriched GO terms with a small "size" meaningful?
GOstats GO RNASeq
updated 8 weeks ago by 58k • written 8 weeks ago by ▴ 10
2
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6
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315
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Biomart's getBM returns no genes for an existing GO-term in grch38, and less then expected in grch37
GO biomaRt
updated 5 months ago by ★ 5.3k • written 5 months ago by • 0
0
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1
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180
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Extracting Go-enrichment and pathway analysis from phytozome annotation file
RNASeq GO
updated 7 months ago by 58k • written 7 months ago by • 0
2
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2
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286
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retrieve gene IDs from GO.db GO
GO GO.db
8 months ago decppced • 0
0
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9
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591
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The GO annotation of fugal species outside of 20 model organisms is outdated
GO biomartr annotation ensemble fungi
updated 8 months ago by 58k • written 8 months ago by • 0
2
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2
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415
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How to download KEGG pathways for list of enriched genes
RNASeqRData GO
10 months ago Wuschel ▴ 10
3
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8
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948
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GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler AnnotationHub GO uniprot
updated 11 weeks ago by ★ 3.2k • written 11 months ago by • 0
2
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0
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209
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Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
11 months ago Ben ▴ 30
0
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1
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1.1k
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topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 12 months ago by • 0 • written 8.9 years ago by ▴ 340
2
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2
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350
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Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 13 months ago by 58k • written 13 months ago by • 0
2
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3
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315
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Error in topGO analysis
software error topGO go
updated 16 months ago by 3.4k • written 16 months ago by • 0
2
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1
reply
657
views
Warning message as converting gene Symbol to ENTREZID
go clusterprofiler
updated 18 months ago by 58k • written 18 months ago by ▴ 10
0
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0
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196
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ViseaGO merge_enrich_terms ERROR
go
18 months ago zaza.inline • 0
0
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9
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528
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ReactomePA error graph
r rnaseq bulk GO ReactomePA
19 months ago camillab. ▴ 10
2
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2
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290
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biomart webservice error when using data from Phytozome
software error go
19 months ago e.lopez-cortegano • 0
1
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5
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373
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No enriched GO terms with 1000 more genes
clusterprofiler GO
19 months ago Ruixuan ▴ 10
0
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1
reply
239
views
incorrect number of dimensions in probeSetSummary function from GOstats
GOstats GO R
updated 19 months ago by 58k • written 19 months ago by ▴ 10
2
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5
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502
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
19 months ago morteza.aslanzadeh ▴ 20
0
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5
replies
339
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Error with using getBM function in biomaRt
go r software error R biomaRt
20 months ago morteza.aslanzadeh ▴ 20
1
vote
2
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247
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About topGO error
go
updated 20 months ago by ▴ 30 • written 20 months ago by • 0
2
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4
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341
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GO/KEEG enrichment for non-model bacteria - help for beginner
bacteria GO KEEG RNAseq
20 months ago liz.marjory • 0
0
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2
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183
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GO analysis without gene IDs?
deseq2 annotation go
updated 20 months ago by 35k • written 20 months ago by ▴ 20
0
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0
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155
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enrichplot pakage no output plot
go
20 months ago Hamidreza Hashemi ▴ 20
0
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1
reply
1.1k
views
GO of clusterprofiler
go
updated 21 months ago by 3.4k • written 21 months ago by • 0
1
vote
3
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245
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TopGO significant genes
TopGO GO
21 months ago Al-a ▴ 10
4
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7
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469
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Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 21 months ago by 44k • written 21 months ago by ▴ 50
6
votes
6
replies
593
views
GO enrichment analysis with goana after performing DE analysis with glmTreat
go DE edger rnaseq glmTreat
updated 21 months ago by 44k • written 21 months ago by ▴ 50
0
votes
1
reply
335
views
Clusterprofiler error: No gene can be mapped
software error go annotation clusterProfiler
21 months ago tianshenbio • 0
0
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0
replies
212
views
How to identify differentially expressed genes from Reactome pathways enriched according to GOseq?
goseq go rna-seq
21 months ago hasse.bossenbroek • 0
0
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0
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156
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ViSEAGO, merge_enrich_terms error
go
21 months ago m.n • 0
0
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4
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271
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<N/A> Gene Ontology while using the AnnotationDbi package
go annotation annotationdbi
21 months ago CUCIO199 • 0
2
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4
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223
views
How to get list of all GOIDs with all genes in each GO term?
go annotation
updated 22 months ago by 58k • written 22 months ago by • 0
1
vote
3
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224
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Extract the relevant information of the genes sets from the Bioconductor annotation package
org.Rn.eg.db annotation go
updated 22 months ago by 58k • written 22 months ago by • 0
0
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0
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145
views
Program to calculate genetic distances with long sequences
probe go
22 months ago antoniorevail • 0
0
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0
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203
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News: RNAseq data analysis with R and Bioconductor
limma deseq2 go edger News
23 months ago info ▴ 10
0
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3
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328
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GSEABase - Map gene/transcript IDs to GOslims?
gseabase go gene ontology goslim
updated 23 months ago by ★ 2.8k • written 23 months ago by ▴ 20
7
votes
7
replies
481
views
GSEABase - View/extract GO terms mapped to each GOslim
go GSEABase GOslim gene ontology
updated 23 months ago by 25k • written 23 months ago by ▴ 20
1
vote
2
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216
views
Species, supported by the clusterProfiler package
software error go
updated 23 months ago by 58k • written 23 months ago by • 0
0
votes
2
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219
views
makeOrgPackage Error in .deriveTableNameFromField(field = keytype, x) : Two fields in the source DB have the same name
software error go AnnotationForge AnnotationDbi
updated 24 months ago by 58k • written 24 months ago by • 0
0
votes
2
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218
views
Go terms for Ensemble gene list
go
2.1 years ago Raquel • 0
0
votes
1
reply
919
views
Cannot Install Org.Hs.eg.db package in RStudio
software error annotation go
updated 2.3 years ago by 2.9k • written 2.3 years ago by • 0
2
votes
11
replies
945
views
R gives error when trying to install EnsDb.Hsapiens.v75 package
go
updated 2.3 years ago by 58k • written 2.3 years ago by • 0
1
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2
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342
views
How could I get index file
go
updated 2.3 years ago by 25k • written 2.3 years ago by • 0
0
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1
reply
786
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
2.3 years ago Raito92 ▴ 50
2
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1
reply
445
views
biomaRt fails to retrieve GO description for some particular gene
biomart go r bioconductor symbol
2.4 years ago foehn ▴ 80
0
votes
1
reply
350
views
Choosing Gene ontology package
go annotation GOenrichment
updated 2.5 years ago by ▴ 650 • written 2.5 years ago by • 0
0
votes
1
reply
802
views
cnetplot graph independently.
go annotation
updated 2.5 years ago by • 0 • written 2.5 years ago by • 0
3
votes
3
replies
440
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 2.5 years ago by 58k • written 2.5 years ago by • 0
4
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1
reply
3.7k
views
WGCNA-unable to install GO.db package
go cancer
updated 2.7 years ago by 25k • written 2.7 years ago by ▴ 20
1
vote
1
reply
435
views
Annotating rice affymetrix data from different gse through biomart
annotation go
updated 2.8 years ago by 58k • written 2.8 years ago by • 0
50 results • Page 1 of 1
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Comment: Cannot install Phyloseq and dada2 by Guido Hooiveld ★ 3.2k
Did you notice this message:? Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.0.0/libra…
Comment: Use of shrunken LFCs to address questions about the distribution of LFCs between by i.sudbery ▴ 20
Thanks Mike. I might have a play with stratifying by expression level. One reason I wasn't looking at gene set testing is that its the nul…
Answer: submitting a BSgenome package by deisianyufg • 0
From my Github repository. I am sorry, I thought the package was already released and realize now that is still only in my github reposito…
Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp by swbarnes2 ▴ 970
Is the one plot a mirror image of the other?
Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between by Michael Love 35k
hi Ian, Great question, and good to be concerned that the mean expression may be a confounder for either analysis, Why not stratify your…
Votes
Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between
Answer: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))
Comment: submitting a BSgenome package
Answer: rlog vs vst for outlier identification
Answer: DESeq2 median of ratios normalization for signature score calculation
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