Showing : GO • reset
0
votes
1
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102
views
Extracting Go-enrichment and pathway analysis from phytozome annotation file
RNASeq GO
updated 9 weeks ago by 57k • written 9 weeks ago by • 0
2
votes
2
replies
148
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retrieve gene IDs from GO.db GO
GO GO.db
12 weeks ago • updated 11 weeks ago decppced • 0
0
votes
9
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355
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The GO annotation of fugal species outside of 20 model organisms is outdated
GO biomartr annotation ensemble fungi
updated 11 weeks ago by 57k • written 3 months ago by • 0
2
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2
replies
164
views
How to download KEGG pathways for list of enriched genes
RNASeqRData GO
5 months ago Wuschel ▴ 10
1
vote
2
replies
312
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler AnnotationHub GO uniprot
updated 5 months ago by ★ 3.0k • written 5 months ago by • 0
1
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0
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101
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
6 months ago Ben ▴ 20
0
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1
reply
922
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topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 6 months ago by • 0 • written 8.4 years ago by ▴ 340
2
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2
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215
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 7 months ago by 57k • written 7 months ago by • 0
2
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3
replies
195
views
Error in topGO analysis
software error topGO go
updated 11 months ago by 3.2k • written 11 months ago by • 0
2
votes
1
reply
280
views
Warning message as converting gene Symbol to ENTREZID
go clusterprofiler
updated 12 months ago by 57k • written 12 months ago by ▴ 10
0
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0
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123
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ViseaGO merge_enrich_terms ERROR
go
13 months ago zaza.inline • 0
0
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9
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378
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ReactomePA error graph
r rnaseq bulk GO ReactomePA
13 months ago camillab. ▴ 10
2
votes
2
replies
178
views
biomart webservice error when using data from Phytozome
software error go
13 months ago e.lopez-cortegano • 0
1
vote
5
replies
257
views
No enriched GO terms with 1000 more genes
clusterprofiler GO
13 months ago Ruixuan ▴ 10
0
votes
1
reply
144
views
incorrect number of dimensions in probeSetSummary function from GOstats
GOstats GO R
updated 13 months ago by 57k • written 13 months ago by ▴ 10
2
votes
5
replies
330
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
14 months ago morteza.aslanzadeh ▴ 20
0
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5
replies
216
views
Error with using getBM function in biomaRt
go r software error R biomaRt
14 months ago morteza.aslanzadeh ▴ 20
1
vote
2
replies
169
views
About topGO error
go
updated 14 months ago by ▴ 30 • written 14 months ago by • 0
2
votes
4
replies
231
views
GO/KEEG enrichment for non-model bacteria - help for beginner
bacteria GO KEEG RNAseq
15 months ago liz.marjory • 0
0
votes
2
replies
123
views
GO analysis without gene IDs?
deseq2 annotation go
updated 15 months ago by 33k • written 15 months ago by ▴ 20
0
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0
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96
views
enrichplot pakage no output plot
go
15 months ago Hamidreza Hashemi ▴ 20
0
votes
1
reply
555
views
GO of clusterprofiler
go
updated 15 months ago by 3.2k • written 15 months ago by • 0
1
vote
3
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161
views
TopGO significant genes
TopGO GO
15 months ago Al-a ▴ 10
4
votes
7
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284
views
Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 15 months ago by 43k • written 15 months ago by ▴ 50
6
votes
6
replies
378
views
GO enrichment analysis with goana after performing DE analysis with glmTreat
go DE edger rnaseq glmTreat
updated 15 months ago by 43k • written 15 months ago by ▴ 50
0
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1
reply
181
views
Clusterprofiler error: No gene can be mapped
software error go annotation clusterProfiler
15 months ago tianshenbio • 0
0
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0
replies
152
views
How to identify differentially expressed genes from Reactome pathways enriched according to GOseq?
goseq go rna-seq
15 months ago hasse.bossenbroek • 0
0
votes
0
replies
93
views
ViSEAGO, merge_enrich_terms error
go
15 months ago m.n • 0
0
votes
4
replies
163
views
<N/A> Gene Ontology while using the AnnotationDbi package
go annotation annotationdbi
16 months ago CUCIO199 • 0
2
votes
4
replies
153
views
How to get list of all GOIDs with all genes in each GO term?
go annotation
updated 16 months ago by 57k • written 16 months ago by • 0
1
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3
replies
122
views
Extract the relevant information of the genes sets from the Bioconductor annotation package
org.Rn.eg.db annotation go
updated 16 months ago by 57k • written 16 months ago by • 0
0
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0
replies
87
views
Program to calculate genetic distances with long sequences
probe go
17 months ago antoniorevail • 0
0
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0
replies
130
views
News: RNAseq data analysis with R and Bioconductor
limma deseq2 go edger News
17 months ago info ▴ 10
0
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3
replies
208
views
GSEABase - Map gene/transcript IDs to GOslims?
gseabase go gene ontology goslim
updated 17 months ago by ★ 2.7k • written 17 months ago by ▴ 20
7
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7
replies
310
views
GSEABase - View/extract GO terms mapped to each GOslim
go GSEABase GOslim gene ontology
updated 17 months ago by 25k • written 17 months ago by ▴ 20
1
vote
2
replies
134
views
Species, supported by the clusterProfiler package
software error go
updated 18 months ago by 57k • written 18 months ago by • 0
0
votes
2
replies
146
views
makeOrgPackage Error in .deriveTableNameFromField(field = keytype, x) : Two fields in the source DB have the same name
software error go AnnotationForge AnnotationDbi
updated 18 months ago by 57k • written 18 months ago by • 0
0
votes
2
replies
131
views
Go terms for Ensemble gene list
go
19 months ago Raquel • 0
0
votes
1
reply
581
views
Cannot Install Org.Hs.eg.db package in RStudio
software error annotation go
updated 21 months ago by 2.8k • written 22 months ago by • 0
2
votes
11
replies
645
views
R gives error when trying to install EnsDb.Hsapiens.v75 package
go
updated 22 months ago by 57k • written 22 months ago by • 0
1
vote
2
replies
272
views
How could I get index file
go
updated 22 months ago by 25k • written 22 months ago by • 0
0
votes
1
reply
563
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
22 months ago Raito92 ▴ 50
2
votes
1
reply
275
views
biomaRt fails to retrieve GO description for some particular gene
biomart go r bioconductor symbol
23 months ago foehn ▴ 60
0
votes
1
reply
296
views
Choosing Gene ontology package
go annotation GOenrichment
updated 24 months ago by ▴ 650 • written 24 months ago by • 0
0
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1
reply
565
views
cnetplot graph independently.
go annotation
updated 2.0 years ago by • 0 • written 2.0 years ago by • 0
3
votes
3
replies
336
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 2.1 years ago by 57k • written 2.1 years ago by • 0
3
votes
1
reply
3.0k
views
WGCNA-unable to install GO.db package
go cancer
updated 2.3 years ago by 25k • written 2.3 years ago by ▴ 20
1
vote
1
reply
347
views
Annotating rice affymetrix data from different gse through biomart
annotation go
updated 2.3 years ago by 57k • written 2.3 years ago by • 0
1
vote
7
replies
989
views
Add annotation, biomaRt installation
software error annotation go
updated 2.4 years ago by ★ 5.0k • written 2.4 years ago by ▴ 10
0
votes
5
replies
702
views
Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interoperate with clusterProfiler in its absence?
annotation go clusterProfiler org.Sc.sgd.db
2.4 years ago Malcolm Cook ★ 1.5k
50 results • Page 1 of 1
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Comment: An error using Diffbind plotprofile by doug.barrows • 0
Hi there, it's hard to tell how to debug without having the data. Could you potentially send me the object you are attempting to use for th…
Comment: DESeq2 Shrinkage methods for scRNA-Seq by Pedro Tan • 0
Thanks Michael! I will stick to apeglm and incorporate alternate size factors for single cell data. All the best, Pedro
Answer: Macbook M1 install genefilter failed by soda • 0
i have solved this problem by myself. share with you. you need to download gfortran in path /opt/R/arm64/bin this website helped me: **h…
Comment: Best practice for quantifying sncRNA by James W. MacDonald 57k
If you used the QIASeq miRNA library, then you are wasting your time. That library adds the UMI barcodes and is intended for you to then up…
Answer: BioCAsia Virtual Meeting, 15-18 October 2020 by Cassandra Holmes • 0
All the types of bio-conductors are presented to the buyers. The change of the [proposal writing help][1] is ensured for the users. The bio…
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BioCAsia Virtual Meeting, 15-18 October 2020
Answer: Selecting pairs of exons from differentially spliced genes
Comment: Idea: Using DESeq2 to test a change in ratio of two genes
Time Series Analysis
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
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