Showing : org.mm.eg.db • reset
3
votes
2
replies
319
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 7 weeks ago by ★ 3.7k • written 7 weeks ago by ▴ 10
1
vote
4
replies
555
views
Large differences in gene content for GO terms between org.Mm.eg.db and msigdbr
org.Mm.eg.db GO msigdbr
7 months ago S ▴ 10
1
vote
2
replies
392
views
select with org.Mm.eg.db does not give ENSEMBL ids
org.Mm.eg.db
8 months ago raf4 ▴ 20
0
votes
1
reply
1.1k
views
Converting gene symbols to entrez ID
AnnotationDbi org.Mm.eg.db
updated 18 months ago by 63k • written 18 months ago by • 0
1
vote
2
replies
1.1k
views
Apparent Ensembl - Entrez gene mis-match in org.Mm.eg.db.
org.Mm.eg.db AnnotationDbi
updated 2.2 years ago by 63k • written 2.2 years ago by ▴ 30
0
votes
1
reply
656
views
ENSEMBL records not complete in org.Mm.eg.db?
org.Mm.eg.db
updated 2.4 years ago by 3.8k • written 2.4 years ago by • 0
0
votes
2
replies
2.0k
views
Error in testForValidKeytype(x, keytype) : Invalid keytype: TAIR. Please use the keytypes method to see a listing of valid arguments.
org.Mm.eg.db
updated 2.4 years ago by ★ 3.7k • written 2.4 years ago by • 0
4
votes
5
replies
1.7k
views
Failed to load "org.Mm.eg.db" package
org.Mm.eg.db
2.5 years ago • updated 2.4 years ago Nicol • 0
2
votes
2
replies
1.5k
views
Error: package or namespace load failed for ‘org.Mm.eg.db':
org.Mm.eg.db
2.5 years ago Jack • 0
0
votes
1
reply
1.1k
views
Download of package ‘org.Mm.eg.db’ failed
org.Mm.eg.db
2.6 years ago kevin • 0
0
votes
4
replies
3.2k
views
Problem with install installation("org.Hs.eg.db") package
org.Mm.eg.db org.Hs.eg.db
2.6 years ago Eslam • 0
1
vote
5
replies
1.9k
views
Is org.Mm.eg.db updated to mus musculus version 99?
org.Mm.eg.db AnnotationDbi
3.4 years ago kavator ▴ 30
2
votes
3
replies
2.3k
views
org.Mm.eg.db gives wrong symbol for MT genes
org.mm.eg.db
10.2 years ago • updated 5.1 years ago Gordon Smyth 48k
1
vote
2
replies
1.1k
views
SYMBOL is not the official MGI gene symbol?
org.mm.eg.db annotationdbi
updated 5.1 years ago by 63k • written 5.1 years ago by ▴ 10
4
votes
3
replies
1.4k
views
Selecting Correct Set of Gene IDs from Mouse Gencode GFF3 for RNA Seq Analysis (Removing Genes without symbols)
deseq2 tximport org.mm.eg.db gencode
5.5 years ago pvd2107 ▴ 30
2
votes
1
reply
1.1k
views
TopGO - Incorrect mapping genes to GO terms
topgo go org.mm.eg.db
updated 5.7 years ago by 63k • written 5.7 years ago by • 0
4
votes
8
replies
4.0k
views
Annotating DEseq output using AnnotationDbi mapIds and most results say NA
AnnotationDbi mapIds org.Mm.eg.db ENSEMBLTRANS
updated 6.7 years ago by 63k • written 6.7 years ago by ▴ 10
1
vote
2
replies
1.0k
views
GO evidence code IMR
org.mm.eg.db GO
7.2 years ago Peter Langfelder ★ 2.8k
0
votes
4
replies
1.3k
views
missing gene_ids in org.Mm.egENSEMBL
org.mm.eg.db annotation
updated 7.8 years ago by 63k • written 7.8 years ago by ▴ 30
7
votes
11
replies
4.3k
views
annotatePeak() in ChIPseeker - how long does it take to run?
annotatePeak chipseeker chipseq org.Mm.eg.db TxDb.Mmusculus.UCSC.mm9.knownGene
updated 8.0 years ago by 25k • written 8.2 years ago by • 0
4
votes
2
replies
3.0k
views
select keys from org.Mm.eg.db
org.mm.eg.db select list
updated 8.0 years ago by 63k • written 8.0 years ago by ★ 1.5k
0
votes
1
reply
2.2k
views
How to use org.Mm.eg.db as chip in topGO printGenes function
topgo org.mm.eg.db
updated 8.2 years ago by • 0 • written 8.3 years ago by • 0
3
votes
2
replies
1.6k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 8.2 years ago by 63k • written 8.2 years ago by • 0
1
vote
2
replies
10k
views
select() gene in db not working although key exists
annotationdbi org.mm.eg.db org.dm.eg.db select
8.5 years ago Patrick Schorderet ▴ 20
1
vote
3
replies
1.2k
views
Genome side annotation for drosophila
genome annotation drosophila melanogaster org.Mm.eg.db
updated 8.5 years ago by ★ 7.2k • written 8.5 years ago by ▴ 20
8
votes
4
replies
4.3k
views
how to extract "Gene type" from org.Mm.eg.db?
annotation org.Mm.eg.db
8.8 years ago Guido Hooiveld ★ 3.7k
26 results • Page 1 of 1
Recent ...
Replies
Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k
I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…
Comment: Biostrings error at retrieving protein sequences by Hervé Pagès 16k
Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…
Comment: Exporting DESeq2 filtered results by camillab. ▴ 10
thanks! I didn't`t notice that. I will cancel it now!
Votes
Batch Effect in DESeq2, how to control, how to remove it, how to address biological question
A: BiomaRt Arabidopsis genome unavailable
Answer: enrichKEGG
A: Effect of lfcThreshold on p-value in DESeq2
Comment: Mixed up sample info with plotPCA
Awards • All
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Popular Question to James W. MacDonald 63k
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