Hi, I am trying to create a similar plot shown on this tutorial:
http://zvfak.blogspot.com/search/label/genomation (under section: Calculating scores that correspond to k-mer or PWM matrix occurence: patternMatrix function).
However, I am trying to demonstrate that motifs for different transcription factors will be found in the same peaks. Is there a way to use the functions from genomation or another tool to do this?
To be a little more clear, the plot I am referring to shows where in each peak the CTCF motif occurs, in green. I would like to add two more transcription factors to a plot like this, in different colors.