Bioconductor Genomation

Showing : genomation • reset

votes

replies

650

views

readTranscriptFeatures R genomation bed

updated 10 months ago by James W. MacDonald 64k • written 10 months ago by sat • 0

votes

replies

1.3k

views

R Rstudio Error readTranscriptFeatures genomation

updated 4.0 years ago by altuna akalin ▴ 20 • written 4.0 years ago by hwaterma • 0

votes

replies

1.4k

views

annotation genomation

updated 4.9 years ago by altuna akalin ▴ 20 • written 4.9 years ago by janani.sundaresan • 0

vote

1.7k

views

genomicfeatures genomation genomicranges methylation annotation

updated 5.3 years ago by altuna akalin ▴ 20 • written 5.3 years ago by alan.g.hudson • 0

votes

1.2k

views

genomation motifs

updated 7.2 years ago by altuna akalin ▴ 20 • written 7.2 years ago by sarah.blackstone7734 • 0

5 results • Page 1 of 1

Recent ...

Replies

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by Aastha Kapoor • 0

After several attempts the code has worked. I connected to a faster internet connection. set the timeout (1000000) and run the command. I …

Comment: DESeq2 estimateSizeFactors iterate takes too long by Karthik • 0

Hello, I agree with you, and we are in process of working with collaborators, but I wanted to get a general opinion on the data and get a …

Comment: It's possible to use clusterProfiler without an annotationDBI package by Guido Hooiveld ★ 3.8k

Code to show it works: > library(clusterProfiler) > > ## use provided 10 IDs, plus as last one add ID that has a GO annotati…

Comment: It's possible to use clusterProfiler without an annotationDBI package by Guido Hooiveld ★ 3.8k

You are almost there... Yet - pay attention to the error message (`--> No gene can be mapped.... --> Expected input gene ID: GO:0055080, .…

Comment: Problem loading HDF5Array in R 4.3.2 by Sarah • 0

Thanks for the reply! I tried this and it is crashing at `h5createFile("test.h5")` even after reinstalling **Rhdf5lib** and **rhdf5** It …

Votes

Answer: Limma/DESeq2 for unbalanced nested design (paired samples)

Result from GSEA for non-model organism not as expected

Comment: DESeq2 estimateSizeFactors iterate takes too long

Answer: DESeq2 estimateSizeFactors iterate takes too long

Comment: biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl

Awards • All

Scholar to Mike Smith ★ 6.2k

Scholar to Hervé Pagès 16k