Pheatmap: how to use breaks for pheatmap
0
0
Entering edit mode
@jarod_v6liberoit-6654
Last seen 5.9 years ago
Italy

I would like to pheatmap but I  have some problems on colors.

 

quantile(mat)
        0%        25%        50%        75%       100%
-2.9058611 -0.4772665 -0.1042894  0.3581126  6.3077411 
mypalette3<-colorRampPalette(c("red","blue"))(n=30)
col_breaks=c(seq(-1,0.09,length = 20),seq(2,10,length= 20))
pheatmap(mat,method="complete",main = "Differential genes padj < 0.1 ",color=mypalette3, show_rownames = F,annotation_legend = FALSE, legend=T, cluster_cols=TRUE,cexRow=0.55,cluster_rows = T,breaks = col_breaks)

Why red come also for positive numbers?

https://postimg.org/image/el1ed1esf/

pheatmap heatmap • 6.8k views
ADD COMMENT

Login before adding your answer.

Traffic: 517 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6