Showing : pheatmap • reset
0
votes
3
replies
406
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 7 weeks ago by 67k • written 7 weeks ago by ▴ 50
0
votes
2
replies
658
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 6 months ago by 67k • written 6 months ago by • 0
0
votes
1
reply
464
views
Changed DESeq2 comparison value but the heatmap is still the same
DESeq2 pheatmap
updated 9 months ago by 67k • written 9 months ago by • 0
0
votes
2
replies
828
views
Heat Map
ColData pheatmap DESeq2
written 17 months ago by • 0
0
votes
1
reply
3.1k
views
Annotation in pheatmap
pheatmap
updated 2.4 years ago by ★ 4.1k • written 2.4 years ago by • 0
0
votes
2
replies
5.5k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
2.5 years ago Bhavana • 0
2
votes
4
replies
2.6k
views
Issues with Pheatmap
pheatmap
2.7 years ago axe880 • 0
0
votes
4
replies
17k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 2.3 years ago by 67k • written 3.3 years ago by • 0
1
vote
3
replies
12k
views
Sorting columns in pheatmap
pheatmap
updated 4 months ago by • 0 • written 3.6 years ago by • 0
0
votes
4
replies
5.9k
views
Pheatmap/Complexheatmap: making a continuous color scale with NAs
R Pathways pheatmap limma
updated 3.7 years ago by ▴ 360 • written 3.7 years ago by ▴ 10
0
votes
1
reply
2.9k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.8 years ago by ★ 4.0k • written 3.8 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Plotting the most expressed genes after conducting DESeq2
DESeq2 pheatmap apeglm
updated 3.8 years ago by 43k • written 3.8 years ago by ▴ 10
0
votes
2
replies
9.1k
views
Add selected row names on pheatmap
R pheatmap
updated 4.0 years ago by ★ 4.6k • written 4.0 years ago by ▴ 30
0
votes
2
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5.8k
views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 4.5 years ago by 43k • written 4.5 years ago by • 0
2
votes
4
replies
11k
views
pheatmap for DEGs
normalization pheatmap
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by ▴ 20
5
votes
11
replies
3.4k
views
Heatmap only including DE genes?
heatmap coolmap pheatmap
updated 4.7 years ago by 52k • written 4.7 years ago by ▴ 60
0
votes
1
reply
5.4k
views
Reordering clusters when plotting pheatmap in R
R pheatmap clusters
5.5 years ago ecg1g15 ▴ 30
0
votes
4
replies
3.1k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.7 years ago lmg • 0
0
votes
6
replies
1.7k
views
stringasfactor = F changes the output of pheatmap, why?
deseq2 pheatmap
updated 5.8 years ago by ★ 13k • written 5.8 years ago by ▴ 10
0
votes
2
replies
1.8k
views
Averaging over biological replicates with DESeq2 for heatmap plotting
deseq2 pheatmap average
updated 6.2 years ago by 67k • written 6.2 years ago by • 0
2
votes
1
reply
2.4k
views
deseq 2x2: highly variable genes are not among differentially expressed gene
deseq2 rld pheatmap dds
updated 7.1 years ago by 43k • written 9.2 years ago by ▴ 10
4
votes
8
replies
8.4k
views
Scaling genes to have unit variance for clustering / heatmaps with DESeq2
deseq2 heatmap.2 bicluster pheatmap
updated 7.1 years ago by 43k • written 9.3 years ago by ▴ 10
0
votes
0
replies
3.2k
views
pheatmap - Error in do_one(nmeth) : NA/NaN/Inf in foreign function call (arg 1)
pheatmap kmeans
7.2 years ago Assa Yeroslaviz ★ 1.5k
1
vote
1
reply
11k
views
Pheatmap clustering and row annotation
R pheatmap cutree
7.2 years ago meseretbrihanu ▴ 10
0
votes
1
reply
2.3k
views
Unsupervised heatmap use tpm or rlog gave different results
deseq2 tpm heatmap pheatmap
updated 7.5 years ago by 43k • written 7.5 years ago by ▴ 40
0
votes
1
reply
3.1k
views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap hclust R dendrogram
7.6 years ago vd4mmind • 0
0
votes
1
reply
1.2k
views
How to solve out the misunstanding of fake "red" "green" on the heatmap
pheatmap
updated 7.6 years ago by ▴ 690 • written 7.6 years ago by ▴ 50
8
votes
1
reply
9.8k
views
extracting the genes associated with the clusters
heatmap.2 pheatmap complexheatmap heatplus
updated 7.8 years ago by ▴ 690 • written 7.8 years ago by ▴ 670
0
votes
0
replies
6.8k
views
Pheatmap: how to use breaks for pheatmap
pheatmap heatmap
8.2 years ago jarod_v6@libero.it ▴ 40
1
vote
1
reply
5.9k
views
adding margins around pheatmap plots
pheatmap
updated 8.3 years ago by ★ 13k • written 8.3 years ago by ▴ 10
1
vote
2
replies
2.8k
views
R crash when matrix nrows exceeds 45000 using pheatmap/heatmap.2
pheatmap heatmap.2
8.8 years ago John ▴ 30
0
votes
2
replies
1.9k
views
Unsupervised analysis problems
pheatmap unsupervised
updated 8.8 years ago by 43k • written 8.8 years ago by ▴ 40
4
votes
5
replies
4.3k
views
Deseq2 unsupervised analysis (heatmap row scaling or none?)
deseq2 pheatmap
8.9 years ago • updated 8.8 years ago jarod_v6@libero.it ▴ 40
4
votes
9
replies
8.6k
views
Upper triangular matrix heatmap using pheatmap package
pheatmap
9.0 years ago Deepak Tanwar ▴ 10
1
vote
0
replies
2.7k
views
heatmap.2() making columns narrower to make them look like microarray?
heatmap.2 pheatmap
9.2 years ago AJC ▴ 10
35 results • Page 1 of 1
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Answer: Cannot install GO.db and org.Hs.eg.db by James W. MacDonald 67k
You might try tracing the namespace loading. ``` Sys.setenv("_R_TRACE_LOADNAMESPACE_"="2") install("org.Hs.eg.db") ``` And see if th…
Answer: p value is 0, padj is 0 by James W. MacDonald 67k
It is quite possible for a very small p-value to remain very small after multiplicity adjustment. I don't know the cutoff for `DESeq2` to r…
Answer: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k
You don't need `rtracklayer` for this (not directly anyway), but instead you need `txdbmaker` which you can use to make a `TxDb` object tha…
Answer: Feature Counts - potential bug with outfile.jcounts by Wei Shi ★ 3.6k
We will further develop the junction quantification module to support the use of user-provided annotation data for annotating detected junc…
Comment: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by georgii.vdovin • 0
Thank you!
Votes
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
Comment: What type of counts data to import for performing Isoform analysis in edgeR
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