Question: Quality Assessment of one color Agilent arrays?
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gravatar for amalbouzid.ing
2.8 years ago by
amalbouzid.ing0 wrote:

Dear Bioconductor,

I have an expression array dataset done with Agilent one color array, and I wanted to do QC using arrayQualityMetrics. I read in the raw Agilent data using limma and background correct and normalization was done according to limma User's guide. This works fine and I got an EList and EListRaw objects. However it seems arrayQualityMetrics doesn't accept these objects as input. Please, How can I assess the quality control of my data. Any one has an idea?

Thanks a lot,

Best

 

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