Showing : agilent microarrays • reset
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Explanation of mroast results for specific biological processes and error with barcodeplot function with a microarray dataset
limma mroast agilent microarrays GO.BP barcodeplot
updated 2.9 years ago by 43k • written 2.9 years ago by ▴ 780
2
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3
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591
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Perform limma based gene-set testing for a two-group comparison in a microarray dataset regarding specific biological processes
limma agilent microarrays mroast fry gene tests gene set testing
updated 2.9 years ago by 43k • written 2.9 years ago by ▴ 780
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5
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How to analyze correctly agilent two-colour microarray data from the ArrayExpress repository with the limma R package
agilent microarrays limma arrayexpress NChannelSet
updated 3.0 years ago by 43k • written 3.0 years ago by ▴ 780
5
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Reading and normalizing two-color Agilent microarrays
limma agilent microarrays
updated 3.1 years ago by ★ 2.6k • written 3.1 years ago by ▴ 10
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4
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672
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Simple differential expression analysis for 2 groups
differential gene expression agilent microarrays microarray DEA Limma
3.1 years ago christiangriffioen • 0
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Targets.txt file missing in agilent GEO data. How do I preprocess raw Agilent file of GEO data or how to makethe expression matrix step by step from …
limma microarray agilent microarrays GEO
updated 3.3 years ago by 58k • written 3.3 years ago by • 0
3
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2
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Agilent description of headers
agilent microarrays
updated 3.3 years ago by ▴ 40 • written 3.3 years ago by • 0
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1
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427
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Reg.: Ringo,open source R package
agilent microarrays chipseq
updated 3.3 years ago by 58k • written 3.3 years ago by • 0
2
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4
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984
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Processing agilent data by limma
limma agilent microarrays
updated 3.4 years ago by 43k • written 3.4 years ago by ▴ 260
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3
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653
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Filtering genes based on Agilent flags
limma agilent microarrays
updated 3.5 years ago by 43k • written 14.3 years ago by ▴ 50
3
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5
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595
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processing agilent data by limma
limma agilent microarrays
updated 3.6 years ago by 43k • written 3.6 years ago by ▴ 260
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2
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660
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problems in reading a file in AgiMicroRna package
agimicrorna read.agimicrorna agilent microarrays
updated 3.9 years ago by ▴ 980 • written 3.9 years ago by • 0
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4
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Agilent microrna microaaray
agilent microarrays microrna analysis
4.1 years ago • updated 4.0 years ago arisarkar88 • 0
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1.4k
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Analyzing Agilent custom array in R
agilent microarrays analyze
updated 4.3 years ago by 58k • written 4.3 years ago by • 0
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1.2k
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read.maimages(targets, source="genepix") Error in `[.data.frame`(obj, , columns[[a]]) : undefined columns selected
bioconductor limma agilent microarrays
updated 4.3 years ago by 58k • written 4.3 years ago by • 0
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1
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1.7k
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R package for analysis Agilent microarray?
agilent microarrays
updated 4.5 years ago by 58k • written 4.5 years ago by • 0
0
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1
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729
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background correction of Single colour Agilent Microarrays
agilent microarrays background correction
updated 4.6 years ago by 43k • written 4.6 years ago by • 0
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6
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1.2k
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Gene set Testing with Limma for Agilent IDs probes?
limma agilent microarrays gene set testing annotation
4.7 years ago Bouzid.a ▴ 10
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475
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Limma code for Single colour microarray analysis with no replicates
limma microarray agilent microarrays single channel
updated 4.8 years ago by 43k • written 4.8 years ago by • 0
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600
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Quality Assessment of one color Agilent arrays?
limma one colour agilent microarrays qualitycontrol arrayqualitymetrics
4.9 years ago Bouzid.a ▴ 10
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4
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871
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Problem with Agilent microarray data analysis using limma package
limma agilent microarrays lmfit
updated 5.2 years ago by 43k • written 5.2 years ago by • 0
6
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11
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microarray data analsis with limma?
limma genepix microarray agilent microarrays
5.3 years ago Mehmet Ilyas Cosacak • 0
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1.8k
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Questions about complex design in limma regarding an agilent microarray dataset with multiple time points and different biological replicates
limma design matrix multiple time points agilent microarrays
updated 5.6 years ago by ★ 27k • written 5.6 years ago by ▴ 70
23 results • Page 1 of 1
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Comment: Macbook M1 install genefilter failed by Michael Love 34k
What happens when you do ``` library(DESeq2) ``` If it says something about genefilter, then just try to install genefilter, not DESeq2 a…
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Field -Ye • 0
Hi Professor Smyth, I would assume that's the analysis demonstrated within user guide, example 4.1. If so, I have performed. Taking the …
Comment: Macbook M1 install genefilter failed by Alexandre • 0
Michael, Do you have perhaps R binary installed for Intel chips ? Mine is arm64.pkg. I read somehwhere the binary for Intel chips works f…
Comment: Macbook M1 install genefilter failed by Alexandre • 0
[n] stops the installation. I've tried to force since it is installed already and then I tried `none` as you said. > BiocManager::inst…
Answer: Error in makeTxDbFromGFF(txomeInfo$gtf) by Michael Love 34k
I see that tximeta found a linked transcriptome. Can you show this part of your code as well? How did you create the `linkedTxome`?
Votes
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
Error in .rowNamesDF<-(x, value = value) :duplicate row.names are not allowed DESeq2
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