Bioconductor Qualitycontrol

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QualityControl methylationArrayAnalysis

19 months ago zusman • 0

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755

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QualityControl Alignment QuasR

updated 2.6 years ago by Michael Stadler ▴ 350 • written 2.6 years ago by h.kozlowski • 0

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474

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folder quality QualityControl AffyExpress

2.8 years ago bastien_chassagnol • 0

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1.2k

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 6.1 years ago by James W. MacDonald 63k • written 6.1 years ago by n.lu • 0

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778

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qualitycontrol

updated 6.5 years ago by Mike Smith ★ 6.1k • written 6.5 years ago by XIA.PAN ▴ 20

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860

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shinymethyl minfi epic microarray methylationepic qualitycontrol

6.6 years ago chelsey.ju • 0

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956

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

6.9 years ago Bouzid.a ▴ 20

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3.2k

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 7.4 years ago by Stephanie M. Gogarten ▴ 870 • written 7.4 years ago by Lna • 0

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1.3k

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NUSE qualitycontrol microarray

updated 7.7 years ago by Diego Diez ▴ 760 • written 7.7 years ago by jacorvar ▴ 40

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2.1k

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rna-seq GC-Content qualitycontrol

updated 7.9 years ago by Matthew McCormack ▴ 180 • written 7.9 years ago by NS ▴ 60

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1.5k

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limma affy probe qualitycontrol design and contrast matrix

updated 8.7 years ago by Gordon Smyth 48k • written 8.7 years ago by alakatos ▴ 130

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1.0k

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

16.4 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

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Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k

In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…

Comment: T.fit function of maSigPro returns error message by hanna.g • 0

Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …

Answer: Deseq2, enrichGO and ensembl ID by James W. MacDonald 63k

1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…

Comment: Doubts regarding Pathview by loyedbend2811 • 0

I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …

Comment: ukb Chromosomal position information was converted into SNPS by wenbo • 0

Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs

Votes

Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

Comment: comparing contrasts in edger/lima using makeContrasts function

Answer: comparing contrasts in edger/lima using makeContrasts function

Answer: Differential expression analysis with only FPKM matrix available from total newb

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