how to annotate TCGA snp6 data in gene centric approach
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@seeker-7773
Last seen 11 months ago
Netherlands

How can i annotate SNP6 probe id with each gene separately 

con = pd.genomewidesnp.6@getdb()

 dbGetQuery(con, "select * from featureSet limit 906600")

this gives an individual SNPs with its associated genes. 

 

microarray dbGetQuery pd.genomewidesnp.6 annotation • 611 views
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There isn't enough information here for us to help you. Please read the posting guide for suggestions on how to ask a question:

  http://www.bioconductor.org/help/support/posting-guide/

Explain what you are trying to do, provide a reproducible piece of code and the output of sessionInfo().

Valerie

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