Hi,

I am trying to install flowCore package (Bioconductor 3.4) in R 3.3.2 (Ubuntu 14.04 LTS). But I am getting following error.

boost_regex/regex.cpp:195:64: error: use of deleted function ‘std::atomic<_Tp*>::atomic(const std::atomic<_Tp*>&) 

[with _Tp = void]’ mem_block_cache block_cache = { 0, 0, BOOST_STATIC_MUTEX_INIT, }; ^ In file included from /home/nitin/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/regex/v4/mem_block_cache.hpp:31:0, from boost_regex/regex.cpp:44: /usr/include/c++/4.8/atomic:298:7: error: declared here atomic(const atomic&) = delete; ^

 boost_regex/regex.cpp:195:64: error: use of deleted function ‘std::atomic<_Tp*>::atomic(const std::atomic<_Tp*>&) [with _Tp = void]’ mem_block_cache block_cache = { 0, 0, BOOST_STATIC_MUTEX_INIT, }; ^ 

In file included from /home/nitin/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/regex/v4/mem_block_cache.hpp:31:0,
  from boost_regex/regex.cpp:44: /usr/include/c++/4.8/atomic:298:7: error: declared here atomic(const atomic&) = delete; ^ 
boost_regex/regex.cpp:195:64:
  error: could not convert ‘{{{0, 0, 0, 0, 0, 0, 0, {0, 0}}}}’ from ‘’ to ‘std::atomic’ mem_block_cache block_cache = { 0, 0, BOOST_STATIC_MUTEX_INIT, };
make: *** [boost_regex/regex.o] Error 1 ERROR: compilation failed for package ‘flowCore’ * removing ‘/home/nitin/R/x86_64-pc-linux-gnu-library/3.3/flowCore’ 

Can anybody suggest some solution thanks.

It seems like flowCore got unsynchronized with BH (Boost header) package. Our package pqsfinder that depends on both BH and flowCore is also affected. I hope flowCore maintainers will fix this as soon as possible.

I believe this was addressed in this post: A: flowCore install issues.

When you add information to a post use 'ADD COMMENT' instead of posting an answer to your own question.

Valerie