flowCore install issues
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@zimontoutoune-11894
Last seen 5.9 years ago

Dear,

The compilation is broken on Linux.  See:

http://bioconductor.org/checkResults/3.5/bioc-LATEST/flowCore/malbec2-install.html

(I am reproducing exactly the same error with my machine)

 

Does anyone have an idea to fix it ?

I would like to read FCS files. Therefore, what is the solution ?

 

Cheers

flowcore package installation compilation error • 1.1k views
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Jiang, Mike ★ 1.3k
@jiang-mike-4886
Last seen 12 months ago
(Private Address)

I've pushed the fix to both BioC release and development. see https://github.com/RGLab/flowCore/issues/66

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@zimontoutoune-11894
Last seen 5.9 years ago

Dear,

Thank you for the fix.

Sorry, I missed the issue you mention. But I am not well experimented in R/BioConductor environment, and it appears to me not so easy to find the good entrance.

For example, the (official) page does not mention the RGlab repo

http://bioconductor.org/packages/release/bioc/html/flowCore.html

Moreover, the fix is not reported yet in the official trunk. When do you think it will ? Because it is easier to install from biocLite than by hand. In other words, what is the "official" bioconductor version ?

 

All the best

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Typically it takes at least 24 hours for BioC to update the prebuild binary package on mac. Windows version may take longer. 

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