Hi,
when I use `bplapply` the process basically stalls. I have to cancel it, when called from RStudio I also have to kill the process.
It happens with:
bplapply(1:10, paste)
I've seen a similar issue with someone on a Windows (https://support.bioconductor.org/p/70435/).
I am working on a openSUSE Leap 42.1 (x86_64)
R version 3.3.1 (2016-06-21) Platform: x86_64-suse-linux-gnu (64-bit) Running under: openSUSE Leap 42.1 (x86_64) locale: [1] LC_CTYPE=de_DE.UTF-8 LC_NUMERIC=C [3] LC_TIME=de_DE.UTF-8 LC_COLLATE=de_DE.UTF-8 [5] LC_MONETARY=de_DE.UTF-8 LC_MESSAGES=de_DE.UTF-8 [7] LC_PAPER=de_DE.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocParallel_1.6.6 loaded via a namespace (and not attached): [1] parallel_3.3.1 tools_3.3.1
Ok, I think `BiocParallel` is not the problem. It seems `Rmpi` is messed up on Suse.
I fixed my mpi and Rmpi installation, however I still have the bplapply problem.