Showing : bplapply • reset
1
vote
4
replies
676
views
BiocParallel: What its the best way to pass large a dataset for parallel processing?
bioconductor bplapply bpiterate iterator BiocParallel
updated 2.2 years ago by 25k • written 2.2 years ago by ▴ 90
6
votes
7
replies
869
views
bplapply with progressbar
bplapply progressbar
updated 2.9 years ago by 25k • written 2.9 years ago by • 0
1
vote
6
replies
668
views
Disable messages for bplapply when in parallel
biocparallel bplapply
updated 3.5 years ago by 25k • written 3.5 years ago by ▴ 30
0
votes
8
replies
965
views
`bplapply` breaks down (BiocParallel_1.6.6, R 3.3.1, openSUSE Leap)
biocparallel bplapply Suse error process
updated 4.8 years ago by • 0 • written 4.8 years ago by • 0
3
votes
2
replies
748
views
bplapply doesn't work in the multicore mode on mac os x
bplapply multicoreParam mac os x
4.9 years ago gmerino ▴ 20
3
votes
4
replies
626
views
bplapply stalling upon error with large data objects
biocparallel bplapply multicore
updated 5.1 years ago by 25k • written 5.1 years ago by ★ 27k
4
votes
3
replies
2.2k
views
Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
summarizeoverlaps rnaseq bplapply rangedsummarizedexperiment read counting
5.2 years ago ErickF ▴ 20
4
votes
1
reply
2.8k
views
BPPARAM = bpparam() takes longer than using BPPARAM = SerialParam()
bplapply
updated 5.5 years ago by 25k • written 5.5 years ago by ▴ 10
12
votes
11
replies
2.4k
views
Memory usage for bplapply -- is the entire environment copied over to each worker thread?
bplapply biocparallel deseq2
updated 6.2 years ago by ★ 6.7k • written 6.2 years ago by ▴ 40
0
votes
0
replies
707
views
Unexpected recursive unlist of bplapply (BiocParallel) results when using only one worker
biocparallel bplapply
6.4 years ago akaever ▴ 30
10 results • Page 1 of 1
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Comment: Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dat by IIart.hubII • 0
What is "coad_clear" in this case? What data have you allotted to it? Can you please share the whole code? Or can anyone answer this questi…
Comment: GenomicScores package: availableGScores and getGScores functions not working by Robert Castelo ★ 2.7k
hi, Indeed you were using an outdated version of the package. Regarding how to install current release version, please read first carefull…
Answer: Unable to install Bioconductor packages by shepherl 2.8k
This normally occurs when R was installed with a different account or an admin account. Unless on this account you won't be able to update…
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
I tried to install the latest version of GenomicScores (2.4.0) by downloading the tar.gz and running `install.packages('GenomicScores_2.4.0…
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
Thanks for the quick response. Below is my sessionInfo R version 3.6.2 (2019-12-12) Platform: x86_64-apple-darwin15.6.0 (64-bit) …
Votes
A: Differential expression analysis starting from TPM data
Comment: deseq2 machine sizing best practices for very large data set
Comment: Extracting normalized counts in MEDIPS
Comment: "full model matrix is less than full rank"
A: Extracting normalized counts in MEDIPS
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